FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6689, 278 aa
  1>>>pF1KE6689 278 - 278 aa - 278 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2307+/-0.000784; mu= 15.2600+/- 0.047
 mean_var=62.7454+/-12.575, 0's: 0 Z-trim(107.5): 15  B-trim: 244 in 2/48
 Lambda= 0.161914
 statistics sampled from 9616 (9621) to 9616 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.296), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS4470.1 HUS1B gene_id:135458|Hs108|chr6         ( 278) 1811 431.4 3.4e-121
CCDS34635.1 HUS1 gene_id:3364|Hs108|chr7           ( 280)  927 224.9 4.9e-59


>>CCDS4470.1 HUS1B gene_id:135458|Hs108|chr6              (278 aa)
 initn: 1811 init1: 1811 opt: 1811  Z-score: 2289.3  bits: 431.4 E(32554): 3.4e-121
Smith-Waterman score: 1811; 99.6% identity (99.6% similar) in 278 aa overlap (1-278:1-278)

               10        20        30        40        50        60
pF1KE6 MKFRAKITGKGCLELFIHVSGTVARLAKVCVLRVRPDSLCFGPAGSGGLHEARLWCEVRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MKFRAKITGKGCLELFIHVSGTVARLAKVCVLRVRPDSLCFGPAGSGGLHEARLWCEVRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GAFQQFRMEGVSEDLDEIHLELTAEHLSRAARSAAGASSLKLQLTHKRRPSLTVAVELVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GAFQQFRMEGVSEDLDEIHLELTAEHLSRAARSAAGASSLKLQLTHKRRPSLTVAVELVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SLGRARSVVHDLPVRVLPRRVWRDCLPPSLRASDASIRLPRWRTLRSIVERMANVGSHVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLGRARSVVHDLPVRVLPRRVWRDCLPPSLRASDASIRLPRWRTLRSIVERMANVGSHVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VEANLSGRMTLSIETEVVSIQSYFKNLGNPPQSAVGVPENRDLESMVQVRVDNRKLLQFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VEANLSGRMTLSIETEVVSIQSYFKNLGNPPQSAVGVPENRDLESMVQVRVDNRKLLQFL
              190       200       210       220       230       240

              250       260       270        
pF1KE6 EGQQIHPTTALCNIWDNTLLQLVLVQEYVSLQYFIPAL
       ::::::::::::::::::::::::::: ::::::::::
CCDS44 EGQQIHPTTALCNIWDNTLLQLVLVQEDVSLQYFIPAL
              250       260       270        

>>CCDS34635.1 HUS1 gene_id:3364|Hs108|chr7                (280 aa)
 initn: 760 init1: 760 opt: 927  Z-score: 1173.3  bits: 224.9 E(32554): 4.9e-59
Smith-Waterman score: 927; 48.9% identity (80.9% similar) in 282 aa overlap (1-278:1-279)

               10        20        30        40           50       
pF1KE6 MKFRAKITGKGCLELFIHVSGTVARLAKVCVLRVRPDSLCF---GPAGSGGLHEARLWCE
       :::::::.  .::. : ..:. .:.:::.:.::. ::.: :      ..::.    .:::
CCDS34 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVS---MWCE
               10        20        30        40        50          

        60         70        80        90       100       110      
pF1KE6 VRQ-GAFQQFRMEGVSEDLDEIHLELTAEHLSRAARSAAGASSLKLQLTHKRRPSLTVAV
       ..: . :..:.::::: . .::.::::.:.:::: ..: .: .::..::.:. : :::.:
CCDS34 LEQENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSV
        60        70        80        90       100       110       

        120       130       140       150       160       170      
pF1KE6 ELVSSLGRARSVVHDLPVRVLPRRVWRDCLPPSLRASDASIRLPRWRTLRSIVERMANVG
       ::.:  . .: :.::.:..:.::..:.:   : .   :.:: ::  .:..:.::.: :..
CCDS34 ELLSMSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDVSIYLPVLKTMKSVVEKMKNIS
       120       130       140       150       160       170       

        180       190       200       210       220       230      
pF1KE6 SHVLVEANLSGRMTLSIETEVVSIQSYFKNLGNPPQSAVGVPENRDLESMVQVRVDNRKL
       .:...::::.:...:.::::.: . ..::.::::: .. .. :.:..: :..:..: :::
CCDS34 NHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRNVEHMAEVHIDIRKL
       180       190       200       210       220       230       

        240       250       260       270         
pF1KE6 LQFLEGQQIHPTTALCNIWDNTLLQLVLVQEYVSLQYFIPAL 
       :::: :::..:: ::::: .: .... :..: :::::::::: 
CCDS34 LQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPALS
       240       250       260       270       280




278 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:25:51 2016 done: Tue Nov  8 15:25:51 2016
 Total Scan time:  1.810 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]