FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6688, 235 aa
  1>>>pF1KE6688 235 - 235 aa - 235 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5026+/-0.000835; mu= 4.7574+/- 0.051
 mean_var=314.5607+/-62.607, 0's: 0 Z-trim(118.4): 16  B-trim: 0 in 0/54
 Lambda= 0.072314
 statistics sampled from 19287 (19303) to 19287 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.593), width:  16
 Scan time:  2.170

The best scores are:                                      opt bits E(32554)
CCDS45560.1 BHLHA9 gene_id:727857|Hs108|chr17      ( 235) 1657 184.9   4e-47


>>CCDS45560.1 BHLHA9 gene_id:727857|Hs108|chr17           (235 aa)
 initn: 1657 init1: 1657 opt: 1657  Z-score: 959.5  bits: 184.9 E(32554): 4e-47
Smith-Waterman score: 1657; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)

               10        20        30        40        50        60
pF1KE6 MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP
              130       140       150       160       170       180

              190       200       210       220       230     
pF1KE6 PHAPLARPSAVAEGPGLAQASGGSWRRCPGASSAGPPPWPRGYLRSAPGMGHPRS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PHAPLARPSAVAEGPGLAQASGGSWRRCPGASSAGPPPWPRGYLRSAPGMGHPRS
              190       200       210       220       230     




235 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:25:24 2016 done: Tue Nov  8 15:25:24 2016
 Total Scan time:  2.170 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]