FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6686, 282 aa
  1>>>pF1KE6686 282 - 282 aa - 282 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0330+/-0.000707; mu= 15.2141+/- 0.043
 mean_var=151.5412+/-28.608, 0's: 0 Z-trim(116.2): 50  B-trim: 49 in 1/53
 Lambda= 0.104186
 statistics sampled from 16722 (16775) to 16722 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.818), E-opt: 0.2 (0.515), width:  16
 Scan time:  2.140

The best scores are:                                      opt bits E(32554)
CCDS12198.1 CD320 gene_id:51293|Hs108|chr19        ( 282) 1952 304.1 7.6e-83
CCDS54210.1 CD320 gene_id:51293|Hs108|chr19        ( 240) 1315 208.2 4.6e-54
CCDS579.1 LRP8 gene_id:7804|Hs108|chr1             ( 700)  399 71.1 2.5e-12


>>CCDS12198.1 CD320 gene_id:51293|Hs108|chr19             (282 aa)
 initn: 1952 init1: 1952 opt: 1952  Z-score: 1600.8  bits: 304.1 E(32554): 7.6e-83
Smith-Waterman score: 1952; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KE6 MSGGWMAQVGAWRTGALGLALLLLLGLGLGLEAAASPLSTPTSAQAAGPSSGSCPPTKFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSGGWMAQVGAWRTGALGLALLLLLGLGLGLEAAASPLSTPTSAQAAGPSSGSCPPTKFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 CRTSGLCVPLTWRCDRDLDCSDGSDEEECRIEPCTQKGQCPPPPGLPCPCTGVSDCSGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CRTSGLCVPLTWRCDRDLDCSDGSDEEECRIEPCTQKGQCPPPPGLPCPCTGVSDCSGGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DKKLRNCSRLACLAGELRCTLSDDCIPLTWRCDGHPDCPDSSDELGCGTNEILPEGDATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DKKLRNCSRLACLAGELRCTLSDDCIPLTWRCDGHPDCPDSSDELGCGTNEILPEGDATT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 MGPPVTLESVTSLRNATTMGPPVTLESVPSVGNATSSSAGDQSGSPTAYGVIAAAAVLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGPPVTLESVTSLRNATTMGPPVTLESVPSVGNATSSSAGDQSGSPTAYGVIAAAAVLSA
              190       200       210       220       230       240

              250       260       270       280  
pF1KE6 SLVTATLLLLSWLRAQERLRPLGLLVAMKESLLLSEQKTSLP
       ::::::::::::::::::::::::::::::::::::::::::
CCDS12 SLVTATLLLLSWLRAQERLRPLGLLVAMKESLLLSEQKTSLP
              250       260       270       280  

>>CCDS54210.1 CD320 gene_id:51293|Hs108|chr19             (240 aa)
 initn: 1609 init1: 1315 opt: 1315  Z-score: 1084.2  bits: 208.2 E(32554): 4.6e-54
Smith-Waterman score: 1529; 85.1% identity (85.1% similar) in 282 aa overlap (1-282:1-240)

               10        20        30        40        50        60
pF1KE6 MSGGWMAQVGAWRTGALGLALLLLLGLGLGLEAAASPLSTPTSAQAAGPSSGSCPPTKFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::            
CCDS54 MSGGWMAQVGAWRTGALGLALLLLLGLGLGLEAAASPLSTPTSAQAAG------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KE6 CRTSGLCVPLTWRCDRDLDCSDGSDEEECRIEPCTQKGQCPPPPGLPCPCTGVSDCSGGT
                                     ::::::::::::::::::::::::::::::
CCDS54 ------------------------------IEPCTQKGQCPPPPGLPCPCTGVSDCSGGT
                                     50        60        70        

              130       140       150       160       170       180
pF1KE6 DKKLRNCSRLACLAGELRCTLSDDCIPLTWRCDGHPDCPDSSDELGCGTNEILPEGDATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DKKLRNCSRLACLAGELRCTLSDDCIPLTWRCDGHPDCPDSSDELGCGTNEILPEGDATT
       80        90       100       110       120       130        

              190       200       210       220       230       240
pF1KE6 MGPPVTLESVTSLRNATTMGPPVTLESVPSVGNATSSSAGDQSGSPTAYGVIAAAAVLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGPPVTLESVTSLRNATTMGPPVTLESVPSVGNATSSSAGDQSGSPTAYGVIAAAAVLSA
      140       150       160       170       180       190        

              250       260       270       280  
pF1KE6 SLVTATLLLLSWLRAQERLRPLGLLVAMKESLLLSEQKTSLP
       ::::::::::::::::::::::::::::::::::::::::::
CCDS54 SLVTATLLLLSWLRAQERLRPLGLLVAMKESLLLSEQKTSLP
      200       210       220       230       240

>>CCDS579.1 LRP8 gene_id:7804|Hs108|chr1                  (700 aa)
 initn: 398 init1: 143 opt: 399  Z-score: 334.8  bits: 71.1 E(32554): 2.5e-12
Smith-Waterman score: 399; 37.7% identity (57.9% similar) in 183 aa overlap (6-182:3-178)

               10        20        30          40        50        
pF1KE6 MSGGWMAQVGAWRTGALGLALLLLLGLGLG--LEAAASPLSTPTSAQAAGPSSGSCPPTK
            . . :  :  :: : ::::: : :     :::.::    ..:  ::.. .:   .
CCDS57    MGLPEPGPLRLLALLLLLLLLLLLQLQHLAAAAADPL---LGGQ--GPAK-DCEKDQ
                  10        20        30           40           50 

       60        70        80        90        100         110     
pF1KE6 FQCRTSGLCVPLTWRCDRDLDCSDGSDEEECRIEPCTQKG-QCPPPPGLPC--PCTGVSD
       ::::.   :.: .::::.: :: : :::..:  . :...   :     .     : :  .
CCDS57 FQCRNER-CIPSVWRCDEDDDCLDHSDEDDCPKKTCADSDFTCDNGHCIHERWKCDGEEE
               60        70        80        90       100       110

         120       130        140       150       160       170    
pF1KE6 CSGGTDKKLRNCSRLACLAGELRC-TLSDDCIPLTWRCDGHPDCPDSSDELGCGTNEILP
       :  :.:..  .:.. .: : .: :   :  :.: .:::::. ::  ..:: ::.:.    
CCDS57 CPDGSDESEATCTKQVCPAEKLSCGPTSHKCVPASWRCDGEKDCEGGADEAGCATSLGTC
              120       130       140       150       160       170

          180       190       200       210       220       230    
pF1KE6 EGDATTMGPPVTLESVTSLRNATTMGPPVTLESVPSVGNATSSSAGDQSGSPTAYGVIAA
       .::    :                                                    
CCDS57 RGDEFQCGDGTCVLAIKHCNQEQDCPDGSDEAGCLQGLNECLHNNGGCSHICTDLKIGFE
              180       190       200       210       220       230




282 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:24:50 2016 done: Tue Nov  8 15:24:50 2016
 Total Scan time:  2.140 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]