FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6681, 340 aa
  1>>>pF1KE6681 340 - 340 aa - 340 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4477+/-0.00097; mu= 15.1332+/- 0.058
 mean_var=60.1306+/-12.266, 0's: 0 Z-trim(104.3): 17  B-trim: 242 in 1/48
 Lambda= 0.165397
 statistics sampled from 7807 (7810) to 7807 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.24), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS32002.1 CLYBL gene_id:171425|Hs108|chr13       ( 340) 2176 527.8 5.1e-150


>>CCDS32002.1 CLYBL gene_id:171425|Hs108|chr13            (340 aa)
 initn: 2176 init1: 2176 opt: 2176  Z-score: 2806.8  bits: 527.8 E(32554): 5.1e-150
Smith-Waterman score: 2176; 99.7% identity (100.0% similar) in 340 aa overlap (1-340:1-340)

               10        20        30        40        50        60
pF1KE6 MALRLLRRAARGAAAAALLRLKASLAADIPRLGYSSSSHHKYIPRRAVLYVPGNDEKKIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MALRLLRRAARGAAAAALLRLKASLAADIPRLGYSSSSHHKYIPRRAVLYVPGNDEKKIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KIPSLNVDCAVLDCEDGVAANKKNEARLRIVKTLEDIDLGPTEKCVRVNSVSSGLAEEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KIPSLNVDCAVLDCEDGVAANKKNEARLRIVKTLEDIDLGPTEKCVRVNSVSSGLAEEDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ETLLQSRVLPSSLMLPKVESPEEIQWFADKFSFHLKGRKLEQPMNLIPFVETAMGLLNFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ETLLQSRVLPSSLMLPKVESPEEIQWFADKFSFHLKGRKLEQPMNLIPFVETAMGLLNFK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 AVCEETLKVGPQVGLFLDAVVFGGEDFRASIGATSSKETLDILYARQKIVVIAKAFGLQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AVCEETLKVGPQVGLFLDAVVFGGEDFRASIGATSSKETLDILYARQKIVVIAKAFGLQA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VDLVYIDFRDGAGLLRQSREGAAMGFTGKQVIHPNQIAVVQEQFSPSPEKIKWAEELIAA
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IDLVYIDFRDGAGLLRQSREGAAMGFTGKQVIHPNQIAVVQEQFSPSPEKIKWAEELIAA
              250       260       270       280       290       300

              310       320       330       340
pF1KE6 FKEHQQLGKGAFTFQGSMIDMPLLKQAQNTVTLATSIKEK
       ::::::::::::::::::::::::::::::::::::::::
CCDS32 FKEHQQLGKGAFTFQGSMIDMPLLKQAQNTVTLATSIKEK
              310       320       330       340




340 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:22:09 2016 done: Tue Nov  8 15:22:09 2016
 Total Scan time:  2.200 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]