FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6676, 286 aa
  1>>>pF1KE6676 286 - 286 aa - 286 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8147+/-0.000879; mu= 17.2758+/- 0.052
 mean_var=56.5145+/-11.610, 0's: 0 Z-trim(105.3): 29  B-trim: 0 in 0/49
 Lambda= 0.170606
 statistics sampled from 8323 (8339) to 8323 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.256), width:  16
 Scan time:  1.550

The best scores are:                                      opt bits E(32554)
CCDS5956.1 CLN8 gene_id:2055|Hs108|chr8            ( 286) 2010 502.9 1.1e-142


>>CCDS5956.1 CLN8 gene_id:2055|Hs108|chr8                 (286 aa)
 initn: 2010 init1: 2010 opt: 2010  Z-score: 2675.1  bits: 502.9 E(32554): 1.1e-142
Smith-Waterman score: 2010; 100.0% identity (100.0% similar) in 286 aa overlap (1-286:1-286)

               10        20        30        40        50        60
pF1KE6 MNPASDGGTSESIFDLDYASWGIRSTLMVAGFVFYLGVFVVCHQLSSSLNATYRSLVARE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MNPASDGGTSESIFDLDYASWGIRSTLMVAGFVFYLGVFVVCHQLSSSLNATYRSLVARE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KVFWDLAATRAVFGVQSTAAGLWALLGDPVLHADKARGQQNWCWFHITTATGFFCFENVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KVFWDLAATRAVFGVQSTAAGLWALLGDPVLHADKARGQQNWCWFHITTATGFFCFENVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 KAGWSESLFWKLNQWLMIHMFHCRMVLTYHMWWVCFWHWDGLVSSLYLPHLTLFLVGLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KAGWSESLFWKLNQWLMIHMFHCRMVLTYHMWWVCFWHWDGLVSSLYLPHLTLFLVGLAL
              190       200       210       220       230       240

              250       260       270       280      
pF1KE6 LTLIINPYWTHKKTQQLLNPVDWNFAQPEAKSRPEGNGQLLRKKRP
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LTLIINPYWTHKKTQQLLNPVDWNFAQPEAKSRPEGNGQLLRKKRP
              250       260       270       280      




286 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:19:57 2016 done: Tue Nov  8 15:19:57 2016
 Total Scan time:  1.550 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]