Result of FASTA (omim) for
pFN21AE6665
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6665, 290 aa
1>>>pF1KE6665 290 - 290 aa - 290 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8565+/-0.000404; mu= 8.6010+/- 0.025
mean_var=104.7117+/-20.618, 0's: 0 Z-trim(114.4): 8 B-trim: 0 in 0/54
Lambda= 0.125336
statistics sampled from 24274 (24280) to 24274 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.285), width: 16
Scan time: 5.570
The best scores are: opt bits E(85289)
NP_001035808 (OMIM: 214400,606598,607706,607831,60 ( 290) 1902 354.3 1.5e-97
NP_061845 (OMIM: 214400,606598,607706,607831,60834 ( 358) 1902 354.4 1.8e-97
XP_011515854 (OMIM: 214400,606598,607706,607831,60 ( 249) 1635 306.0 4.6e-83
XP_011515853 (OMIM: 214400,606598,607706,607831,60 ( 456) 1274 240.9 3.5e-63
XP_016869074 (OMIM: 214400,606598,607706,607831,60 ( 419) 1064 202.9 8.7e-52
XP_016869075 (OMIM: 214400,606598,607706,607831,60 ( 385) 823 159.3 1.1e-38
>>NP_001035808 (OMIM: 214400,606598,607706,607831,608340 (290 aa)
initn: 1902 init1: 1902 opt: 1902 Z-score: 1872.1 bits: 354.3 E(85289): 1.5e-97
Smith-Waterman score: 1902; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRLNSTGEVPVLIHGENIICEATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 DSLPMDAYTHGCILHPELTVDSMIPAYATTRIRSQIGNTESELKKLAEENPDLQEAYIAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSLPMDAYTHGCILHPELTVDSMIPAYATTRIRSQIGNTESELKKLAEENPDLQEAYIAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QKRLKSKLLDHDNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQPWLCGESFTLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKRLKSKLLDHDNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQPWLCGESFTLAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 VSLAVTLHRLKFLGFARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSLAVTLHRLKFLGFARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTA
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 FRVAKKRAPKVLGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPRPNYF
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRVAKKRAPKVLGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPRPNYF
250 260 270 280 290
>>NP_061845 (OMIM: 214400,606598,607706,607831,608340) g (358 aa)
initn: 1902 init1: 1902 opt: 1902 Z-score: 1870.7 bits: 354.4 E(85289): 1.8e-97
Smith-Waterman score: 1902; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:69-358)
10 20 30
pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLE
::::::::::::::::::::::::::::::
NP_061 KVRLVIAEKALKCEEHDVSLPLSEHNEPWFMRLNSTGEVPVLIHGENIICEATQIIDYLE
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE6 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE6 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE6 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET
220 230 240 250 260 270
220 230 240 250 260 270
pF1KE6 YYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 YYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFM
280 290 300 310 320 330
280 290
pF1KE6 LFRKRLGSMILAFRPRPNYF
::::::::::::::::::::
NP_061 LFRKRLGSMILAFRPRPNYF
340 350
>>XP_011515854 (OMIM: 214400,606598,607706,607831,608340 (249 aa)
initn: 1635 init1: 1635 opt: 1635 Z-score: 1612.2 bits: 306.0 E(85289): 4.6e-83
Smith-Waterman score: 1635; 100.0% identity (100.0% similar) in 249 aa overlap (42-290:1-249)
20 30 40 50 60 70
pF1KE6 LIHGENIICEATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHG
::::::::::::::::::::::::::::::
XP_011 MPDKESMYYPRVQHYRELLDSLPMDAYTHG
10 20 30
80 90 100 110 120 130
pF1KE6 CILHPELTVDSMIPAYATTRIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CILHPELTVDSMIPAYATTRIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDH
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE6 DNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLK
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE6 FLGFARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLGFARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKV
160 170 180 190 200 210
260 270 280 290
pF1KE6 LGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPRPNYF
:::::::::::::::::::::::::::::::::::::::
XP_011 LGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPRPNYF
220 230 240
>>XP_011515853 (OMIM: 214400,606598,607706,607831,608340 (456 aa)
initn: 1272 init1: 1272 opt: 1274 Z-score: 1255.4 bits: 240.9 E(85289): 3.5e-63
Smith-Waterman score: 1371; 79.7% identity (80.0% similar) in 290 aa overlap (1-290:225-456)
10 20 30
pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLE
::::::::::::::::::::::::::::::
XP_011 KVRLVIAEKALKCEEHDVSLPLSEHNEPWFMRLNSTGEVPVLIHGENIICEATQIIDYLE
200 210 220 230 240 250
40 50 60 70 80 90
pF1KE6 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT
:::::
XP_011 QTFLD-------------------------------------------------------
100 110 120 130 140 150
pF1KE6 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ
.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ---GQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ
260 270 280 290 300 310
160 170 180 190 200 210
pF1KE6 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET
320 330 340 350 360 370
220 230 240 250 260 270
pF1KE6 YYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFM
380 390 400 410 420 430
280 290
pF1KE6 LFRKRLGSMILAFRPRPNYF
::::::::::::::::::::
XP_011 LFRKRLGSMILAFRPRPNYF
440 450
>>XP_016869074 (OMIM: 214400,606598,607706,607831,608340 (419 aa)
initn: 1064 init1: 1064 opt: 1064 Z-score: 1050.7 bits: 202.9 E(85289): 8.7e-52
Smith-Waterman score: 1064; 97.6% identity (98.2% similar) in 168 aa overlap (1-168:225-392)
10 20 30
pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLE
::::::::::::::::::::::::::::::
XP_016 KVRLVIAEKALKCEEHDVSLPLSEHNEPWFMRLNSTGEVPVLIHGENIICEATQIIDYLE
200 210 220 230 240 250
40 50 60 70 80 90
pF1KE6 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT
260 270 280 290 300 310
100 110 120 130 140 150
pF1KE6 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ
320 330 340 350 360 370
160 170 180 190 200 210
pF1KE6 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET
::::::::::::: .:
XP_016 VETELQRRNEETPASHMQHTGGRTAHLVPKTTVDLAELAALTVYQ
380 390 400 410
>>XP_016869075 (OMIM: 214400,606598,607706,607831,608340 (385 aa)
initn: 823 init1: 823 opt: 823 Z-score: 815.8 bits: 159.3 E(85289): 1.1e-38
Smith-Waterman score: 823; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:225-349)
10 20 30
pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLE
::::::::::::::::::::::::::::::
XP_016 KVRLVIAEKALKCEEHDVSLPLSEHNEPWFMRLNSTGEVPVLIHGENIICEATQIIDYLE
200 210 220 230 240 250
40 50 60 70 80 90
pF1KE6 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT
260 270 280 290 300 310
100 110 120 130 140 150
pF1KE6 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ
:::::::::::::::::::::::::::::::::::
XP_016 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKVFHHWKSSLDLHPSMCRPDLLCPLR
320 330 340 350 360 370
160 170 180 190 200 210
pF1KE6 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET
XP_016 SVLYGQPFSFC
380
290 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:14:29 2016 done: Tue Nov 8 15:14:30 2016
Total Scan time: 5.570 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]