FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6662, 276 aa
  1>>>pF1KE6662 276 - 276 aa - 276 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2527+/-0.000867; mu= 15.0394+/- 0.052
 mean_var=60.5080+/-12.072, 0's: 0 Z-trim(105.9): 16  B-trim: 172 in 1/49
 Lambda= 0.164880
 statistics sampled from 8688 (8694) to 8688 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.267), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS4905.1 RSPH9 gene_id:221421|Hs108|chr6         ( 276) 1809 438.7 2.2e-123
CCDS55005.1 RSPH9 gene_id:221421|Hs108|chr6        ( 306)  854 211.5 5.8e-55


>>CCDS4905.1 RSPH9 gene_id:221421|Hs108|chr6              (276 aa)
 initn: 1809 init1: 1809 opt: 1809  Z-score: 2328.6  bits: 438.7 E(32554): 2.2e-123
Smith-Waterman score: 1809; 100.0% identity (100.0% similar) in 276 aa overlap (1-276:1-276)

               10        20        30        40        50        60
pF1KE6 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 EGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 EGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSWSIQMERGNALVVLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSWSIQMERGNALVVLR
              190       200       210       220       230       240

              250       260       270      
pF1KE6 SLLWPGLTFYHAPRTKNYGYVYVGTGEKNMDLPFML
       ::::::::::::::::::::::::::::::::::::
CCDS49 SLLWPGLTFYHAPRTKNYGYVYVGTGEKNMDLPFML
              250       260       270      

>>CCDS55005.1 RSPH9 gene_id:221421|Hs108|chr6             (306 aa)
 initn: 854 init1: 854 opt: 854  Z-score: 1100.2  bits: 211.5 E(32554): 5.8e-55
Smith-Waterman score: 1333; 86.9% identity (89.8% similar) in 245 aa overlap (1-245:1-230)

               10        20        30        40        50        60
pF1KE6 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 EGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE
       :::::::::::               ::::::::::::::::::::::::::::::::::
CCDS55 EGEKVFEEEIV---------------IDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE
              130                      140       150       160     

              190       200       210       220       230       240
pF1KE6 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSWSIQMERGNALVVLR
       ::::::::::::::::::::::::::::::::::::::::::::: .. .   . :.   
CCDS55 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSEAVVQGDFTWLLSRC
         170       180       190       200       210       220     

              250       260       270                              
pF1KE6 SLLWPGLTFYHAPRTKNYGYVYVGTGEKNMDLPFML                        
       .. ::                                                       
CCDS55 GFGWPCSWDSCSVSMRVLEHPDGEGQCPGGAAQPALAGPHLLPCSPHQELWLRLRGHWRE
         230       240       250       260       270       280     




276 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:12:48 2016 done: Tue Nov  8 15:12:48 2016
 Total Scan time:  2.180 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]