FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6661, 274 aa
  1>>>pF1KE6661 274 - 274 aa - 274 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7724+/-0.000817; mu= 12.5394+/- 0.049
 mean_var=67.2756+/-13.266, 0's: 0 Z-trim(106.7): 17  B-trim: 0 in 0/50
 Lambda= 0.156367
 statistics sampled from 9154 (9161) to 9154 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.281), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS746.1 GCLM gene_id:2730|Hs108|chr1             ( 274) 1802 415.2 2.5e-116
CCDS81352.1 GCLM gene_id:2730|Hs108|chr1           ( 252) 1368 317.3 6.8e-87


>>CCDS746.1 GCLM gene_id:2730|Hs108|chr1                  (274 aa)
 initn: 1802 init1: 1802 opt: 1802  Z-score: 2202.1  bits: 415.2 E(32554): 2.5e-116
Smith-Waterman score: 1802; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KE6 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEELHDCIQKTLNEWSSQINP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEELHDCIQKTLNEWSSQINP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH
              190       200       210       220       230       240

              250       260       270    
pF1KE6 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS
       ::::::::::::::::::::::::::::::::::
CCDS74 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS
              250       260       270    

>>CCDS81352.1 GCLM gene_id:2730|Hs108|chr1                (252 aa)
 initn: 1632 init1: 1368 opt: 1368  Z-score: 1673.5  bits: 317.3 E(32554): 6.8e-87
Smith-Waterman score: 1592; 92.0% identity (92.0% similar) in 274 aa overlap (1-274:1-252)

               10        20        30        40        50        60
pF1KE6 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEELHDCIQKTLNEWSSQINP
       ::::::::::::::::::::::::::::::::::::::::::                  
CCDS81 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEE------------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KE6 DLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA
           ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ----EFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA
                 50        60        70        80        90        

              130       140       150       160       170       180
pF1KE6 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ
      100       110       120       130       140       150        

              190       200       210       220       230       240
pF1KE6 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH
      160       170       180       190       200       210        

              250       260       270    
pF1KE6 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS
       ::::::::::::::::::::::::::::::::::
CCDS81 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS
      220       230       240       250  




274 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:12:14 2016 done: Tue Nov  8 15:12:15 2016
 Total Scan time:  1.640 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]