FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6659, 290 aa
  1>>>pF1KE6659 290 - 290 aa - 290 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4595+/-0.000865; mu= 14.4416+/- 0.052
 mean_var=60.9864+/-12.144, 0's: 0 Z-trim(104.8): 20  B-trim: 10 in 2/51
 Lambda= 0.164232
 statistics sampled from 8070 (8073) to 8070 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.248), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS6007.1 NAT1 gene_id:9|Hs108|chr8               ( 290) 1951 470.7 5.5e-133
CCDS55205.1 NAT1 gene_id:9|Hs108|chr8              ( 352) 1951 470.7 6.5e-133
CCDS6008.1 NAT2 gene_id:10|Hs108|chr8              ( 290) 1597 386.8 9.7e-108


>>CCDS6007.1 NAT1 gene_id:9|Hs108|chr8                    (290 aa)
 initn: 1951 init1: 1951 opt: 1951  Z-score: 2501.0  bits: 470.7 E(32554): 5.5e-133
Smith-Waterman score: 1951; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KE6 MDIEAYLERIGYKKSRNKLDLETLTDILQHQIRAVPFENLNIHCGDAMDLGLEAIFDQVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MDIEAYLERIGYKKSRNKLDLETLTDILQHQIRAVPFENLNIHCGDAMDLGLEAIFDQVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RRNRGGWCLQVNHLLYWALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTIDGRNYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RRNRGGWCLQVNHLLYWALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTIDGRNYI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VDAGFGRSYQMWQPLELISGKDQPQVPCVFRLTEENGFWYLDQIRREQYIPNEEFLHSDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VDAGFGRSYQMWQPLELISGKDQPQVPCVFRLTEENGFWYLDQIRREQYIPNEEFLHSDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LEDSKYRKIYSFTLKPRTIEDFESMNTYLQTSPSSVFTSKSFCSLQTPDGVHCLVGFTLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LEDSKYRKIYSFTLKPRTIEDFESMNTYLQTSPSSVFTSKSFCSLQTPDGVHCLVGFTLT
              190       200       210       220       230       240

              250       260       270       280       290
pF1KE6 HRRFNYKDNTDLIEFKTLSEEEIEKVLKNIFNISLQRKLVPKHGDRFFTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 HRRFNYKDNTDLIEFKTLSEEEIEKVLKNIFNISLQRKLVPKHGDRFFTI
              250       260       270       280       290

>>CCDS55205.1 NAT1 gene_id:9|Hs108|chr8                   (352 aa)
 initn: 1951 init1: 1951 opt: 1951  Z-score: 2499.7  bits: 470.7 E(32554): 6.5e-133
Smith-Waterman score: 1951; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:63-352)

                                             10        20        30
pF1KE6                               MDIEAYLERIGYKKSRNKLDLETLTDILQH
                                     ::::::::::::::::::::::::::::::
CCDS55 SGIQARKKQQSVFWIKTEDQPTFNLLRKGIMDIEAYLERIGYKKSRNKLDLETLTDILQH
             40        50        60        70        80        90  

               40        50        60        70        80        90
pF1KE6 QIRAVPFENLNIHCGDAMDLGLEAIFDQVVRRNRGGWCLQVNHLLYWALTTIGFETTMLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QIRAVPFENLNIHCGDAMDLGLEAIFDQVVRRNRGGWCLQVNHLLYWALTTIGFETTMLG
            100       110       120       130       140       150  

              100       110       120       130       140       150
pF1KE6 GYVYSTPAKKYSTGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQVPCVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GYVYSTPAKKYSTGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQVPCVF
            160       170       180       190       200       210  

              160       170       180       190       200       210
pF1KE6 RLTEENGFWYLDQIRREQYIPNEEFLHSDLLEDSKYRKIYSFTLKPRTIEDFESMNTYLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RLTEENGFWYLDQIRREQYIPNEEFLHSDLLEDSKYRKIYSFTLKPRTIEDFESMNTYLQ
            220       230       240       250       260       270  

              220       230       240       250       260       270
pF1KE6 TSPSSVFTSKSFCSLQTPDGVHCLVGFTLTHRRFNYKDNTDLIEFKTLSEEEIEKVLKNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TSPSSVFTSKSFCSLQTPDGVHCLVGFTLTHRRFNYKDNTDLIEFKTLSEEEIEKVLKNI
            280       290       300       310       320       330  

              280       290
pF1KE6 FNISLQRKLVPKHGDRFFTI
       ::::::::::::::::::::
CCDS55 FNISLQRKLVPKHGDRFFTI
            340       350  

>>CCDS6008.1 NAT2 gene_id:10|Hs108|chr8                   (290 aa)
 initn: 1597 init1: 1597 opt: 1597  Z-score: 2047.7  bits: 386.8 E(32554): 9.7e-108
Smith-Waterman score: 1597; 80.7% identity (92.8% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KE6 MDIEAYLERIGYKKSRNKLDLETLTDILQHQIRAVPFENLNIHCGDAMDLGLEAIFDQVV
       ::::::.::::::.::::::::::::::.::::::::::::.:::.::.::::::::..:
CCDS60 MDIEAYFERIGYKNSRNKLDLETLTDILEHQIRAVPFENLNMHCGQAMELGLEAIFDHIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RRNRGGWCLQVNHLLYWALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTIDGRNYI
       ::::::::::::.:::::::::::.::::::: :  :..::::::.::::::::::::::
CCDS60 RRNRGGWCLQVNQLLYWALTTIGFQTTMLGGYFYIPPVNKYSTGMVHLLLQVTIDGRNYI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VDAGFGRSYQMWQPLELISGKDQPQVPCVFRLTEENGFWYLDQIRREQYIPNEEFLHSDL
       :::: : : :::::::::::::::::::.: :::: :.:::::::::::: :.:::.: :
CCDS60 VDAGSGSSSQMWQPLELISGKDQPQVPCIFCLTEERGIWYLDQIRREQYITNKEFLNSHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LEDSKYRKIYSFTLKPRTIEDFESMNTYLQTSPSSVFTSKSFCSLQTPDGVHCLVGFTLT
       :  .:..::: :::.::::::::::::::::::.: : . ::::::::.::.::::: ::
CCDS60 LPKKKHQKIYLFTLEPRTIEDFESMNTYLQTSPTSSFITTSFCSLQTPEGVYCLVGFILT
              190       200       210       220       230       240

              250       260       270       280       290
pF1KE6 HRRFNYKDNTDLIEFKTLSEEEIEKVLKNIFNISLQRKLVPKHGDRFFTI
       .:.:::::::::.:::::.:::.:.::.:::.::: :.:::: ::  .::
CCDS60 YRKFNYKDNTDLVEFKTLTEEEVEEVLRNIFKISLGRNLVPKPGDGSLTI
              250       260       270       280       290




290 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:11:45 2016 done: Tue Nov  8 15:11:45 2016
 Total Scan time:  1.800 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]