FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6658, 255 aa
  1>>>pF1KE6658 255 - 255 aa - 255 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8078+/-0.00104; mu= 2.8389+/- 0.062
 mean_var=122.2113+/-24.714, 0's: 0 Z-trim(106.9): 29  B-trim: 20 in 1/50
 Lambda= 0.116016
 statistics sampled from 9229 (9246) to 9229 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.284), width:  16
 Scan time:  1.300

The best scores are:                                      opt bits E(32554)
CCDS77476.1 CCDC148 gene_id:130940|Hs108|chr2      ( 255) 1672 290.8 6.2e-79
CCDS33304.1 CCDC148 gene_id:130940|Hs108|chr2      ( 591) 1672 290.9 1.3e-78


>>CCDS77476.1 CCDC148 gene_id:130940|Hs108|chr2           (255 aa)
 initn: 1672 init1: 1672 opt: 1672  Z-score: 1530.6  bits: 290.8 E(32554): 6.2e-79
Smith-Waterman score: 1672; 99.6% identity (100.0% similar) in 255 aa overlap (1-255:1-255)

               10        20        30        40        50        60
pF1KE6 MCAASASPDNLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MCAASASPDNLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KEQTLIKQHKQVWWQEYQRLNEVRCKMESEIKSLLNEENIGNECLCDLTNFEQELSEQQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KEQTLIKQHKQVWWQEYQRLNEVRCKMESEIKSLLNEENIGNECLCDLTNFEQELSEQQC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSVKVLEEVDFVKKQLKTVFERLRLE
       ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS77 TYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSMKVLEEVDFVKKQLKTVFERLRLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 QQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQ
              190       200       210       220       230       240

              250     
pF1KE6 KKLQDFNLQLEDIYR
       :::::::::::::::
CCDS77 KKLQDFNLQLEDIYR
              250     

>>CCDS33304.1 CCDC148 gene_id:130940|Hs108|chr2           (591 aa)
 initn: 1672 init1: 1672 opt: 1672  Z-score: 1524.6  bits: 290.9 E(32554): 1.3e-78
Smith-Waterman score: 1672; 99.6% identity (100.0% similar) in 255 aa overlap (1-255:1-255)

               10        20        30        40        50        60
pF1KE6 MCAASASPDNLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MCAASASPDNLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KEQTLIKQHKQVWWQEYQRLNEVRCKMESEIKSLLNEENIGNECLCDLTNFEQELSEQQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KEQTLIKQHKQVWWQEYQRLNEVRCKMESEIKSLLNEENIGNECLCDLTNFEQELSEQQC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSVKVLEEVDFVKKQLKTVFERLRLE
       ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS33 TYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSMKVLEEVDFVKKQLKTVFERLRLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 QQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQ
              190       200       210       220       230       240

              250                                                  
pF1KE6 KKLQDFNLQLEDIYR                                             
       :::::::::::::::                                             
CCDS33 KKLQDFNLQLEDIYRNCQLSEEDHWIYQAILDQYPGDLFGRRTLYLDMLQRYFPHKSRHD
              250       260       270       280       290       300




255 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:11:13 2016 done: Tue Nov  8 15:11:14 2016
 Total Scan time:  1.300 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]