Result of FASTA (omim) for
pFN21AE6651
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6651, 246 aa
1>>>pF1KE6651 246 - 246 aa - 246 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2672+/-0.000291; mu= 2.5527+/- 0.018
mean_var=165.4937+/-33.270, 0's: 0 Z-trim(123.0): 14 B-trim: 473 in 1/58
Lambda= 0.099697
statistics sampled from 42054 (42068) to 42054 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.493), width: 16
Scan time: 6.510
The best scores are: opt bits E(85289)
NP_001139511 (OMIM: 231070,607983) RAB6-interactin ( 246) 1643 247.1 2.1e-65
NP_689494 (OMIM: 231070,607983) RAB6-interacting g ( 394) 1643 247.3 3.1e-65
XP_011508451 (OMIM: 231070,607983) PREDICTED: RAB6 ( 377) 1312 199.6 6.3e-51
XP_016858296 (OMIM: 231070,607983) PREDICTED: RAB6 ( 214) 400 68.3 1.2e-11
XP_011508452 (OMIM: 231070,607983) PREDICTED: RAB6 ( 214) 400 68.3 1.2e-11
NP_001307181 (OMIM: 231070,607983) RAB6-interactin ( 214) 400 68.3 1.2e-11
XP_011508453 (OMIM: 231070,607983) PREDICTED: RAB6 ( 214) 400 68.3 1.2e-11
XP_006711691 (OMIM: 231070,607983) PREDICTED: RAB6 ( 214) 400 68.3 1.2e-11
>>NP_001139511 (OMIM: 231070,607983) RAB6-interacting go (246 aa)
initn: 1643 init1: 1643 opt: 1643 Z-score: 1295.3 bits: 247.1 E(85289): 2.1e-65
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE6 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL
190 200 210 220 230 240
pF1KE6 DYSYAR
::::::
NP_001 DYSYAR
>>NP_689494 (OMIM: 231070,607983) RAB6-interacting golgi (394 aa)
initn: 1643 init1: 1643 opt: 1643 Z-score: 1292.3 bits: 247.3 E(85289): 3.1e-65
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE6 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL
190 200 210 220 230 240
pF1KE6 DYSYAR
::::::
NP_689 DYSYARKRFDRAEAEYIAAKLDIQRKTEIKEQLTEHLCTIIQQNELRKAKKLEELMQQLD
250 260 270 280 290 300
>>XP_011508451 (OMIM: 231070,607983) PREDICTED: RAB6-int (377 aa)
initn: 1312 init1: 1312 opt: 1312 Z-score: 1035.3 bits: 199.6 E(85289): 6.3e-51
Smith-Waterman score: 1484; 93.1% identity (93.1% similar) in 246 aa overlap (1-246:1-229)
10 20 30 40 50 60
pF1KE6 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR
:::::::::::::::::::::::::::: :::::::::::::::
XP_011 MSWAAVLAVAAARFGHFWGCRWPGPMAQ-----------------DPFEPQRRLPAKKSR
10 20 30 40
70 80 90 100 110 120
pF1KE6 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE6 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE6 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL
170 180 190 200 210 220
pF1KE6 DYSYAR
::::::
XP_011 DYSYARKRFDRAEAEYIAAKLDIQRKTEIKEQLTEHLCTIIQQNELRKAKKLEELMQQLD
230 240 250 260 270 280
>>XP_016858296 (OMIM: 231070,607983) PREDICTED: RAB6-int (214 aa)
initn: 400 init1: 400 opt: 400 Z-score: 330.0 bits: 68.3 E(85289): 1.2e-11
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 66 aa overlap (181-246:1-66)
160 170 180 190 200 210
pF1KE6 PPKPDCKLEKKKVELQEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKL
::::::::::::::::::::::::::::::
XP_016 MEEKNKRKKALLAKAIAERSKRTQAETMKL
10 20 30
220 230 240
pF1KE6 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYAR
::::::::::::::::::::::::::::::::::::
XP_016 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYIAAKLDIQRKTEIK
40 50 60 70 80 90
XP_016 EQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVERLLHEQEVESRRPVV
100 110 120 130 140 150
>>XP_011508452 (OMIM: 231070,607983) PREDICTED: RAB6-int (214 aa)
initn: 400 init1: 400 opt: 400 Z-score: 330.0 bits: 68.3 E(85289): 1.2e-11
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 66 aa overlap (181-246:1-66)
160 170 180 190 200 210
pF1KE6 PPKPDCKLEKKKVELQEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKL
::::::::::::::::::::::::::::::
XP_011 MEEKNKRKKALLAKAIAERSKRTQAETMKL
10 20 30
220 230 240
pF1KE6 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYAR
::::::::::::::::::::::::::::::::::::
XP_011 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYIAAKLDIQRKTEIK
40 50 60 70 80 90
XP_011 EQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVERLLHEQEVESRRPVV
100 110 120 130 140 150
>>NP_001307181 (OMIM: 231070,607983) RAB6-interacting go (214 aa)
initn: 400 init1: 400 opt: 400 Z-score: 330.0 bits: 68.3 E(85289): 1.2e-11
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 66 aa overlap (181-246:1-66)
160 170 180 190 200 210
pF1KE6 PPKPDCKLEKKKVELQEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKL
::::::::::::::::::::::::::::::
NP_001 MEEKNKRKKALLAKAIAERSKRTQAETMKL
10 20 30
220 230 240
pF1KE6 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYAR
::::::::::::::::::::::::::::::::::::
NP_001 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYIAAKLDIQRKTEIK
40 50 60 70 80 90
NP_001 EQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVERLLHEQEVESRRPVV
100 110 120 130 140 150
>>XP_011508453 (OMIM: 231070,607983) PREDICTED: RAB6-int (214 aa)
initn: 400 init1: 400 opt: 400 Z-score: 330.0 bits: 68.3 E(85289): 1.2e-11
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 66 aa overlap (181-246:1-66)
160 170 180 190 200 210
pF1KE6 PPKPDCKLEKKKVELQEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKL
::::::::::::::::::::::::::::::
XP_011 MEEKNKRKKALLAKAIAERSKRTQAETMKL
10 20 30
220 230 240
pF1KE6 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYAR
::::::::::::::::::::::::::::::::::::
XP_011 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYIAAKLDIQRKTEIK
40 50 60 70 80 90
XP_011 EQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVERLLHEQEVESRRPVV
100 110 120 130 140 150
>>XP_006711691 (OMIM: 231070,607983) PREDICTED: RAB6-int (214 aa)
initn: 400 init1: 400 opt: 400 Z-score: 330.0 bits: 68.3 E(85289): 1.2e-11
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 66 aa overlap (181-246:1-66)
160 170 180 190 200 210
pF1KE6 PPKPDCKLEKKKVELQEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKL
::::::::::::::::::::::::::::::
XP_006 MEEKNKRKKALLAKAIAERSKRTQAETMKL
10 20 30
220 230 240
pF1KE6 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYAR
::::::::::::::::::::::::::::::::::::
XP_006 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYIAAKLDIQRKTEIK
40 50 60 70 80 90
XP_006 EQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVERLLHEQEVESRRPVV
100 110 120 130 140 150
246 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:08:05 2016 done: Tue Nov 8 15:08:06 2016
Total Scan time: 6.510 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]