FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6644, 242 aa
  1>>>pF1KE6644 242 - 242 aa - 242 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7066+/-0.000707; mu= 14.4947+/- 0.043
 mean_var=94.3293+/-18.686, 0's: 0 Z-trim(111.9): 10  B-trim: 0 in 0/51
 Lambda= 0.132054
 statistics sampled from 12729 (12735) to 12729 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.391), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS4128.1 FTMT gene_id:94033|Hs108|chr5           ( 242) 1644 322.5 1.6e-88
CCDS41655.1 FTH1 gene_id:2495|Hs108|chr11          ( 183)  981 196.1 1.3e-50
CCDS14227.1 FTHL17 gene_id:53940|Hs108|chrX        ( 183)  752 152.5 1.8e-37
CCDS33070.1 FTL gene_id:2512|Hs108|chr19           ( 175)  654 133.8 7.4e-32


>>CCDS4128.1 FTMT gene_id:94033|Hs108|chr5                (242 aa)
 initn: 1644 init1: 1644 opt: 1644  Z-score: 1702.8  bits: 322.5 E(32554): 1.6e-88
Smith-Waterman score: 1644; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242)

               10        20        30        40        50        60
pF1KE6 MLSCFRLLSRHISPSLASLRPVRCCFALPLRWAPGRPLDPRQIAPRRPLAAAASSRDPTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLSCFRLLSRHISPSLASLRPVRCCFALPLRWAPGRPLDPRQIAPRRPLAAAASSRDPTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PAAGPSRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PAAGPSRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 EETEHAEKLMRLQNQRGGRIRLQDIKKPEQDDWESGLHAMECALLLEKNVNQSLLELHAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EETEHAEKLMRLQNQRGGRIRLQDIKKPEQDDWESGLHAMECALLLEKNVNQSLLELHAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 ASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNLVKMGAPDAGLAEYLFDTHTLGNENK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNLVKMGAPDAGLAEYLFDTHTLGNENK
              190       200       210       220       230       240

         
pF1KE6 QN
       ::
CCDS41 QN
         

>>CCDS41655.1 FTH1 gene_id:2495|Hs108|chr11               (183 aa)
 initn: 986 init1: 971 opt: 981  Z-score: 1021.8  bits: 196.1 E(32554): 1.3e-50
Smith-Waterman score: 981; 80.6% identity (93.9% similar) in 180 aa overlap (63-242:4-183)

             40        50        60        70        80        90  
pF1KE6 APGRPLDPRQIAPRRPLAAAASSRDPTGPAAGPSRVRQNFHPDSEAAINRQINLELYASY
                                     :. :.::::.: ::::::::::::::::::
CCDS41                            MTTASTSQVRQNYHQDSEAAINRQINLELYASY
                                          10        20        30   

            100       110       120       130       140       150  
pF1KE6 VYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKPEQDD
       :::::.:::.::::::.::..::::::.:: :::::::.::::::::: :::::::. ::
CCDS41 VYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDD
            40        50        60        70        80        90   

            160       170       180       190       200       210  
pF1KE6 WESGLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHV
       :::::.:::::: ::::::::::::: ::.::.:::::::.::.:::::::.::::::::
CCDS41 WESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHV
           100       110       120       130       140       150   

            220       230       240  
pF1KE6 HNLVKMGAPDAGLAEYLFDTHTLGNENKQN
        :: :::::..:::::::: ::::. ....
CCDS41 TNLRKMGAPESGLAEYLFDKHTLGDSDNES
           160       170       180   

>>CCDS14227.1 FTHL17 gene_id:53940|Hs108|chrX             (183 aa)
 initn: 765 init1: 749 opt: 752  Z-score: 786.1  bits: 152.5 E(32554): 1.8e-37
Smith-Waterman score: 752; 65.4% identity (85.5% similar) in 179 aa overlap (63-241:4-182)

             40        50        60        70        80        90  
pF1KE6 APGRPLDPRQIAPRRPLAAAASSRDPTGPAAGPSRVRQNFHPDSEAAINRQINLELYASY
                                     : ::.:::..  . .:::: .:.::::.::
CCDS14                            MATAQPSQVRQKYDTNCDAAINSHITLELYTSY
                                          10        20        30   

            100       110       120       130       140       150  
pF1KE6 VYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKPEQDD
       .:::::.::.::::::.:: ::::. : .. :::.::::::: :::.: :.::.::: . 
CCDS14 LYLSMAFYFNRDDVALENFFRYFLRLSDDKMEHAQKLMRLQNLRGGHICLHDIRKPECQG
            40        50        60        70        80        90   

            160       170       180       190       200       210  
pF1KE6 WESGLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHV
       ::::: ::: :. ::::::::::.:. :: .::::.:: :::..::.::::.::::: .:
CCDS14 WESGLVAMESAFHLEKNVNQSLLDLYQLAVEKGDPQLCHFLESHYLHEQVKTIKELGGYV
           100       110       120       130       140       150   

            220       230       240  
pF1KE6 HNLVKMGAPDAGLAEYLFDTHTLGNENKQN
        :: :. .:.:::::::::  :::.. :. 
CCDS14 SNLRKICSPEAGLAEYLFDKLTLGGRVKET
           160       170       180   

>>CCDS33070.1 FTL gene_id:2512|Hs108|chr19                (175 aa)
 initn: 660 init1: 644 opt: 654  Z-score: 685.4  bits: 133.8 E(32554): 7.4e-32
Smith-Waterman score: 654; 54.3% identity (82.7% similar) in 173 aa overlap (66-238:3-175)

          40        50        60        70        80        90     
pF1KE6 RPLDPRQIAPRRPLAAAASSRDPTGPAAGPSRVRQNFHPDSEAAINRQINLELYASYVYL
                                     :..:::.  : :::.:  .:: : :::.::
CCDS33                             MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYL
                                           10        20        30  

         100       110       120       130       140       150     
pF1KE6 SMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKPEQDDWES
       :...::.::::::.. :..: . ..:. :  :.:...:::::::  .:::::: .:.: .
CCDS33 SLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQDIKKPAEDEWGK
             40        50        60        70        80        90  

         160       170       180       190       200       210     
pF1KE6 GLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNL
          ::. :. :::..::.::.::::.: . ::::::::::..:.:.:: ::..:::. ::
CCDS33 TPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNL
            100       110       120       130       140       150  

         220       230       240  
pF1KE6 VKMGAPDAGLAEYLFDTHTLGNENKQN
        ..:.:.:::.::::.  :: ..    
CCDS33 HRLGGPEAGLGEYLFERLTLKHD    
            160       170         




242 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:03:55 2016 done: Tue Nov  8 15:03:55 2016
 Total Scan time:  1.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]