Result of FASTA (ccds) for
pFN21AE6642
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6642, 282 aa
1>>>pF1KE6642 282 - 282 aa - 282 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1724+/-0.000919; mu= 16.4294+/- 0.055
mean_var=100.4661+/-19.821, 0's: 0 Z-trim(108.5): 116 B-trim: 3 in 1/50
Lambda= 0.127957
statistics sampled from 10100 (10224) to 10100 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.314), width: 16
Scan time: 2.360
The best scores are: opt bits E(32554)
CCDS10250.1 NPTN gene_id:27020|Hs108|chr15 ( 282) 1867 355.0 3.5e-98
CCDS58379.1 NPTN gene_id:27020|Hs108|chr15 ( 278) 1817 345.8 2.1e-95
CCDS10249.1 NPTN gene_id:27020|Hs108|chr15 ( 398) 1679 320.5 1.2e-87
CCDS58380.1 NPTN gene_id:27020|Hs108|chr15 ( 394) 1629 311.2 7.3e-85
CCDS12034.1 BSG gene_id:682|Hs108|chr19 ( 269) 622 125.2 5.2e-29
CCDS12033.1 BSG gene_id:682|Hs108|chr19 ( 385) 612 123.5 2.4e-28
CCDS12032.1 BSG gene_id:682|Hs108|chr19 ( 205) 556 112.8 2e-25
CCDS58635.1 BSG gene_id:682|Hs108|chr19 ( 176) 515 105.2 3.5e-23
>>CCDS10250.1 NPTN gene_id:27020|Hs108|chr15 (282 aa)
initn: 1867 init1: 1867 opt: 1867 Z-score: 1876.2 bits: 355.0 E(32554): 3.5e-98
Smith-Waterman score: 1867; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)
10 20 30 40 50 60
pF1KE6 MSGSSLPSALALSLLLVSGSLLPGPGAAQNEPRIVTSEEVIIRDSPVLPVTLQCNLTSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSGSSLPSALALSLLLVSGSLLPGPGAAQNEPRIVTSEEVIIRDSPVLPVTLQCNLTSSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 HTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 APDITGHKRSENKNEGQDATMYCKSVGYPHPDWIWRKKENGMPMDIVNTSGRFFIINKEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 APDITGHKRSENKNEGQDATMYCKSVGYPHPDWIWRKKENGMPMDIVNTSGRFFIINKEN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 YTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVI
190 200 210 220 230 240
250 260 270 280
pF1KE6 IVVYEKRKRPDEVPDDDEPAGPMKTNSTNNHKDKNLRQRNTN
::::::::::::::::::::::::::::::::::::::::::
CCDS10 IVVYEKRKRPDEVPDDDEPAGPMKTNSTNNHKDKNLRQRNTN
250 260 270 280
>>CCDS58379.1 NPTN gene_id:27020|Hs108|chr15 (278 aa)
initn: 1681 init1: 1681 opt: 1817 Z-score: 1826.4 bits: 345.8 E(32554): 2.1e-95
Smith-Waterman score: 1817; 98.6% identity (98.6% similar) in 282 aa overlap (1-282:1-278)
10 20 30 40 50 60
pF1KE6 MSGSSLPSALALSLLLVSGSLLPGPGAAQNEPRIVTSEEVIIRDSPVLPVTLQCNLTSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MSGSSLPSALALSLLLVSGSLLPGPGAAQNEPRIVTSEEVIIRDSPVLPVTLQCNLTSSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 HTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 HTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 APDITGHKRSENKNEGQDATMYCKSVGYPHPDWIWRKKENGMPMDIVNTSGRFFIINKEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 APDITGHKRSENKNEGQDATMYCKSVGYPHPDWIWRKKENGMPMDIVNTSGRFFIINKEN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 YTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVI
190 200 210 220 230 240
250 260 270 280
pF1KE6 IVVYEKRKRPDEVPDDDEPAGPMKTNSTNNHKDKNLRQRNTN
::::::::::::::: :::::::::::::::::::::::
CCDS58 IVVYEKRKRPDEVPD----AGPMKTNSTNNHKDKNLRQRNTN
250 260 270
>>CCDS10249.1 NPTN gene_id:27020|Hs108|chr15 (398 aa)
initn: 1848 init1: 1679 opt: 1679 Z-score: 1686.8 bits: 320.5 E(32554): 1.2e-87
Smith-Waterman score: 1679; 99.6% identity (100.0% similar) in 252 aa overlap (31-282:147-398)
10 20 30 40 50 60
pF1KE6 MSGSSLPSALALSLLLVSGSLLPGPGAAQNEPRIVTSEEVIIRDSPVLPVTLQCNLTSSS
.:::::::::::::::::::::::::::::
CCDS10 RASNDPKRNDLRQNPSITWIRAQATISVLQKPRIVTSEEVIIRDSPVLPVTLQCNLTSSS
120 130 140 150 160 170
70 80 90 100 110 120
pF1KE6 HTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKA
180 190 200 210 220 230
130 140 150 160 170 180
pF1KE6 APDITGHKRSENKNEGQDATMYCKSVGYPHPDWIWRKKENGMPMDIVNTSGRFFIINKEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 APDITGHKRSENKNEGQDATMYCKSVGYPHPDWIWRKKENGMPMDIVNTSGRFFIINKEN
240 250 260 270 280 290
190 200 210 220 230 240
pF1KE6 YTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVI
300 310 320 330 340 350
250 260 270 280
pF1KE6 IVVYEKRKRPDEVPDDDEPAGPMKTNSTNNHKDKNLRQRNTN
::::::::::::::::::::::::::::::::::::::::::
CCDS10 IVVYEKRKRPDEVPDDDEPAGPMKTNSTNNHKDKNLRQRNTN
360 370 380 390
>>CCDS58380.1 NPTN gene_id:27020|Hs108|chr15 (394 aa)
initn: 1662 init1: 1493 opt: 1629 Z-score: 1637.0 bits: 311.2 E(32554): 7.3e-85
Smith-Waterman score: 1629; 98.0% identity (98.4% similar) in 252 aa overlap (31-282:147-394)
10 20 30 40 50 60
pF1KE6 MSGSSLPSALALSLLLVSGSLLPGPGAAQNEPRIVTSEEVIIRDSPVLPVTLQCNLTSSS
.:::::::::::::::::::::::::::::
CCDS58 RASNDPKRNDLRQNPSITWIRAQATISVLQKPRIVTSEEVIIRDSPVLPVTLQCNLTSSS
120 130 140 150 160 170
70 80 90 100 110 120
pF1KE6 HTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 HTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKA
180 190 200 210 220 230
130 140 150 160 170 180
pF1KE6 APDITGHKRSENKNEGQDATMYCKSVGYPHPDWIWRKKENGMPMDIVNTSGRFFIINKEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 APDITGHKRSENKNEGQDATMYCKSVGYPHPDWIWRKKENGMPMDIVNTSGRFFIINKEN
240 250 260 270 280 290
190 200 210 220 230 240
pF1KE6 YTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVI
300 310 320 330 340 350
250 260 270 280
pF1KE6 IVVYEKRKRPDEVPDDDEPAGPMKTNSTNNHKDKNLRQRNTN
::::::::::::::: :::::::::::::::::::::::
CCDS58 IVVYEKRKRPDEVPD----AGPMKTNSTNNHKDKNLRQRNTN
360 370 380 390
>>CCDS12034.1 BSG gene_id:682|Hs108|chr19 (269 aa)
initn: 498 init1: 363 opt: 622 Z-score: 634.3 bits: 125.2 E(32554): 5.2e-29
Smith-Waterman score: 622; 38.4% identity (69.2% similar) in 279 aa overlap (10-282:1-269)
10 20 30 40 50
pF1KE6 MSGSSLPSALALSLLLVSG-SLLPGPGAAQNEPRIVTSEEVIIRDSPVLPVTLQCNLTSS
.: .:... : .:: ::. . :. : . : .: : :.:..:
CCDS12 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDL--GSKIL---LTCSLNDS
10 20 30 40
60 70 80 90 100 110
pF1KE6 SHTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDS-GEYHCVYHFVSAPKANATIEV
. .: : :.:: :. ... :.... ..:. ::: :: :. : ..:.:..
CCDS12 ATEVTGHRWLKGGVVLKEDALPGQKTEFKVD---SDDQWGEYSCV--FLPEPMGTANIQL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE6 KAAPDITGHKRSENKNEGQDATMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS-GRFFII
.. : . . : ::. :::. : . ::: . : :: : : .. ..: : .:::.
CCDS12 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE6 NKENYTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIII
.... .::.: ::.. :::.:.::.:.. :: ... .:::::::: :::::::.::...
CCDS12 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLV
170 180 190 200 210 220
240 250 260 270 280
pF1KE6 LVVIIVVYEKRKRPDEVPDDDEP-AGPMKTNSTN-NHKDKNLRQRNTN
::.:: .::::..:..: :::. ..:.:... . : : ::.::::..
CCDS12 LVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
230 240 250 260
>>CCDS12033.1 BSG gene_id:682|Hs108|chr19 (385 aa)
initn: 470 init1: 363 opt: 612 Z-score: 622.5 bits: 123.5 E(32554): 2.4e-28
Smith-Waterman score: 612; 40.1% identity (72.2% similar) in 237 aa overlap (50-282:153-385)
20 30 40 50 60 70
pF1KE6 SLLPGPGAAQNEPRIVTSEEVIIRDSPVLPVTLQCNLTSSSHTLTYSYWTKNGVELSATR
. : :.:..:. .: : :.:: :.
CCDS12 PRVKWVRAQAVVLVLEPGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA
130 140 150 160 170 180
80 90 100 110 120 130
pF1KE6 KNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDA
... :..... .. ::: :: :. : ..:.:.... : . . : ::. :::. :
CCDS12 LPGQKTEFKVDSD--DQWGEYSCV--FLPEPMGTANIQLHGPPRVKAVKSSEHINEGETA
190 200 210 220 230
140 150 160 170 180 190
pF1KE6 TMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS-GRFFIINKENYTELNIVNLQITEDPGE
. ::: . : :: : : .. ..: : .:::. .... .::.: ::.. :::.
CCDS12 MLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ
240 250 260 270 280 290
200 210 220 230 240 250
pF1KE6 YECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVIIVVYEKRKRPDEVPDDD
:.::.:.. :: ... .:::::::: :::::::.::...::.:: .::::..:..: :::
CCDS12 YRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDD
300 310 320 330 340 350
260 270 280
pF1KE6 EP-AGPMKTNSTN-NHKDKNLRQRNTN
. ..:.:... . : : ::.::::..
CCDS12 DAGSAPLKSSGQHQNDKGKNVRQRNSS
360 370 380
>>CCDS12032.1 BSG gene_id:682|Hs108|chr19 (205 aa)
initn: 498 init1: 363 opt: 556 Z-score: 569.9 bits: 112.8 E(32554): 2e-25
Smith-Waterman score: 556; 42.6% identity (74.6% similar) in 209 aa overlap (79-282:3-205)
50 60 70 80 90 100
pF1KE6 PVTLQCNLTSSSHTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDS-GEYHCVYHFV
...:: .: :.. ..:. ::: :: :.
CCDS12 MKQSDASPQE-RVD---SDDQWGEYSCV--FL
10 20
110 120 130 140 150 160
pF1KE6 SAPKANATIEVKAAPDITGHKRSENKNEGQDATMYCKSVGYPH-PDWIWRKKENGMPMDI
: ..:.:.... : . . : ::. :::. : . ::: . : :: : : .. .
CCDS12 PEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKAL
30 40 50 60 70 80
170 180 190 200 210 220
pF1KE6 VNTS-GRFFIINKENYTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLW
.: : .:::. .... .::.: ::.. :::.:.::.:.. :: ... .:::::::: ::
CCDS12 MNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALW
90 100 110 120 130 140
230 240 250 260 270 280
pF1KE6 PFLGILAEIIILVVIIVVYEKRKRPDEVPDDDEP-AGPMKTNSTN-NHKDKNLRQRNTN
:::::.::...::.:: .::::..:..: :::. ..:.:... . : : ::.::::..
CCDS12 PFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
150 160 170 180 190 200
>>CCDS58635.1 BSG gene_id:682|Hs108|chr19 (176 aa)
initn: 498 init1: 363 opt: 515 Z-score: 529.8 bits: 105.2 E(32554): 3.5e-23
Smith-Waterman score: 515; 44.5% identity (76.3% similar) in 173 aa overlap (114-282:4-176)
90 100 110 120 130 140
pF1KE6 NMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDATMYC
:.:.... : . . : ::. :::. : . :
CCDS58 MGTANIQLHGPPRVKAVKSSEHINEGETAMLVC
10 20 30
150 160 170 180 190 200
pF1KE6 KSVGYPH-PDWIWRKKENGMPMDIVNTS-GRFFIINKENYTELNIVNLQITEDPGEYECN
:: . : :: : : .. ..: : .:::. .... .::.: ::.. :::.:.::
CCDS58 KSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCN
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE6 ATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVIIVVYEKRKRPDEVPDDDEP-A
.:.. :: ... .:::::::: :::::::.::...::.:: .::::..:..: :::. .
CCDS58 GTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDDDAGS
100 110 120 130 140 150
270 280
pF1KE6 GPMKTNSTN-NHKDKNLRQRNTN
.:.:... . : : ::.::::..
CCDS58 APLKSSGQHQNDKGKNVRQRNSS
160 170
282 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:02:36 2016 done: Tue Nov 8 15:02:36 2016
Total Scan time: 2.360 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]