FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6640, 226 aa
  1>>>pF1KE6640 226 - 226 aa - 226 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1559+/-0.000603; mu= 14.9556+/- 0.036
 mean_var=76.5059+/-15.254, 0's: 0 Z-trim(112.9): 49  B-trim: 4 in 2/50
 Lambda= 0.146631
 statistics sampled from 13541 (13586) to 13541 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.417), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS12589.1 CD79A gene_id:973|Hs108|chr19          ( 226) 1589 344.8 2.7e-95
CCDS46088.1 CD79A gene_id:973|Hs108|chr19          ( 188)  685 153.5 8.6e-38


>>CCDS12589.1 CD79A gene_id:973|Hs108|chr19               (226 aa)
 initn: 1589 init1: 1589 opt: 1589  Z-score: 1824.4  bits: 344.8 E(32554): 2.7e-95
Smith-Waterman score: 1589; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)

               10        20        30        40        50        60
pF1KE6 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NANVTWWRVLHGNYTWPPEFLGPGEDPNGTLIIQNVNKSHGGIYVCRVQEGNESYQQSCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NANVTWWRVLHGNYTWPPEFLGPGEDPNGTLIIQNVNKSHGGIYVCRVQEGNESYQQSCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGD
              130       140       150       160       170       180

              190       200       210       220      
pF1KE6 EYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP
              190       200       210       220      

>>CCDS46088.1 CD79A gene_id:973|Hs108|chr19               (188 aa)
 initn: 1312 init1: 679 opt: 685  Z-score: 792.0  bits: 153.5 E(32554): 8.6e-38
Smith-Waterman score: 1240; 82.7% identity (83.2% similar) in 226 aa overlap (1-226:1-188)

               10        20        30        40        50        60
pF1KE6 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NANVTWWRVLHGNYTWPPEFLGPGEDPNGTLIIQNVNKSHGGIYVCRVQEGNESYQQSCG
       ::::::::::::::::::::::::::::                                
CCDS46 NANVTWWRVLHGNYTWPPEFLGPGEDPN--------------------------------
               70        80                                        

              130       140       150       160       170       180
pF1KE6 TYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGD
             .:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ------EPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGD
             90       100       110       120       130       140  

              190       200       210       220      
pF1KE6 EYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP
            150       160       170       180        




226 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:01:25 2016 done: Tue Nov  8 15:01:25 2016
 Total Scan time:  2.290 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]