FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6632, 247 aa
  1>>>pF1KE6632 247 - 247 aa - 247 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9348+/-0.000871; mu= 16.0071+/- 0.052
 mean_var=56.5899+/-11.834, 0's: 0 Z-trim(105.4): 23  B-trim: 598 in 1/47
 Lambda= 0.170492
 statistics sampled from 8382 (8395) to 8382 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.258), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(32554)
CCDS11115.1 MPDU1 gene_id:9526|Hs108|chr17         ( 247) 1589 398.9 1.6e-111
CCDS82054.1 MPDU1 gene_id:9526|Hs108|chr17         ( 192)  850 217.1   7e-57


>>CCDS11115.1 MPDU1 gene_id:9526|Hs108|chr17              (247 aa)
 initn: 1589 init1: 1589 opt: 1589  Z-score: 2115.4  bits: 398.9 E(32554): 1.6e-111
Smith-Waterman score: 1589; 99.6% identity (100.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KE6 MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 MHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIATQLLFYWNAKPP
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS11 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQLLFYWNAKPP
              190       200       210       220       230       240

              
pF1KE6 HKQKKAQ
       :::::::
CCDS11 HKQKKAQ
              

>>CCDS82054.1 MPDU1 gene_id:9526|Hs108|chr17              (192 aa)
 initn: 846 init1: 846 opt: 850  Z-score: 1134.7  bits: 217.1 E(32554): 7e-57
Smith-Waterman score: 850; 83.4% identity (87.6% similar) in 169 aa overlap (1-164:1-169)

               10        20        30        40        50        60
pF1KE6 MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLV
               70        80        90       100       110       120

              130           140        150       160       170     
pF1KE6 MHYRGQTVKGVAFLA----CYGLVLLVLLS-PLTPLTVVTLLQASNVPAVVVGRLLQAAT
       ::::::::::.. :     : .      ::    : :..:  :::. :.           
CCDS82 MHYRGQTVKGAGDLPKSRLCGSWEPCWELSFSRQPPTTTTGTQASSQPSQSSCCLGAPWP
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KE6 NYHNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIATQLLFYW
                                                                   
CCDS82 ESSLPFRKPEIP                                                
              190                                                  




247 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:57:13 2016 done: Tue Nov  8 14:57:14 2016
 Total Scan time:  1.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]