FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6630, 257 aa
  1>>>pF1KE6630 257 - 257 aa - 257 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4434+/-0.00083; mu= 14.0385+/- 0.050
 mean_var=64.1425+/-12.573, 0's: 0 Z-trim(106.9): 13  B-trim: 0 in 0/50
 Lambda= 0.160141
 statistics sampled from 9247 (9254) to 9247 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.284), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS43524.1 PACRG gene_id:135138|Hs108|chr6        ( 257) 1727 407.4 4.8e-114
CCDS5284.1 PACRG gene_id:135138|Hs108|chr6         ( 296) 1379 327.1 8.7e-90


>>CCDS43524.1 PACRG gene_id:135138|Hs108|chr6             (257 aa)
 initn: 1727 init1: 1727 opt: 1727  Z-score: 2160.9  bits: 407.4 E(32554): 4.8e-114
Smith-Waterman score: 1727; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)

               10        20        30        40        50        60
pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
              190       200       210       220       230       240

              250       
pF1KE6 FINIKYVVPTYESCLLN
       :::::::::::::::::
CCDS43 FINIKYVVPTYESCLLN
              250       

>>CCDS5284.1 PACRG gene_id:135138|Hs108|chr6              (296 aa)
 initn: 1713 init1: 1379 opt: 1379  Z-score: 1725.4  bits: 327.1 E(32554): 8.7e-90
Smith-Waterman score: 1590; 86.5% identity (86.5% similar) in 289 aa overlap (1-250:1-289)

               10        20        30        40        50        60
pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
              130       140       150       160       170       180

              190       200                                        
pF1KE6 MVGKALVPYYRQILPVLNIFKNMN------------------------------------
       ::::::::::::::::::::::::                                    
CCDS52 MVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVA
              190       200       210       220       230       240

             210       220       230       240       250       
pF1KE6 ---VNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN
          ::::::::::::::::::::::::::::::::::::::::::::::       
CCDS52 EIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN
              250       260       270       280       290      




257 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:55:58 2016 done: Tue Nov  8 14:55:59 2016
 Total Scan time:  1.890 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]