FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6623, 318 aa
  1>>>pF1KE6623 318 - 318 aa - 318 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5777+/-0.000301; mu= 10.9444+/- 0.019
 mean_var=97.8680+/-19.721, 0's: 0 Z-trim(118.5): 2  B-trim: 0 in 0/56
 Lambda= 0.129644
 statistics sampled from 31495 (31497) to 31495 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.369), width:  16
 Scan time:  5.660

The best scores are:                                      opt bits E(85289)
NP_064708 (OMIM: 612837,614654) ubiquinone biosynt ( 318) 2107 403.8 2.3e-112


>>NP_064708 (OMIM: 612837,614654) ubiquinone biosynthesi  (318 aa)
 initn: 2107 init1: 2107 opt: 2107  Z-score: 2138.2  bits: 403.8 E(85289): 2.3e-112
Smith-Waterman score: 2107; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KE6 MAAAAVSGALGRAGWRLLQLRCLPVARCRQALVPRAFHASAVGLRSSDEQKQQPPNSFSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 MAAAAVSGALGRAGWRLLQLRCLPVARCRQALVPRAFHASAVGLRSSDEQKQQPPNSFSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QHSETQGAEKPDPESSHSPPRYTDQGGEEEEDYESEEQLQHRILTAALEFVPAHGWTAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 QHSETQGAEKPDPESSHSPPRYTDQGGEEEEDYESEEQLQHRILTAALEFVPAHGWTAEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 IAEGAQSLGLSSAAASMFGKDGSELILHFVTQCNTRLTRVLEEEQKLVQLGQAEKRKTDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 IAEGAQSLGLSSAAASMFGKDGSELILHFVTQCNTRLTRVLEEEQKLVQLGQAEKRKTDQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 FLRDAVETRLRMLIPYIEHWPRALSILMLPHNIPSSLSLLTSMVDDMWHYAGDQSTDFNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 FLRDAVETRLRMLIPYIEHWPRALSILMLPHNIPSSLSLLTSMVDDMWHYAGDQSTDFNW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 YTRRAMLAAIYNTTELVMMQDSSPDFEDTWRFLENRVNDAMNMGHTAKQVKSTGEALVQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 YTRRAMLAAIYNTTELVMMQDSSPDFEDTWRFLENRVNDAMNMGHTAKQVKSTGEALVQG
              250       260       270       280       290       300

              310        
pF1KE6 LMGAAVTLKNLTGLNQRR
       ::::::::::::::::::
NP_064 LMGAAVTLKNLTGLNQRR
              310        




318 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:52:46 2016 done: Tue Nov  8 14:52:47 2016
 Total Scan time:  5.660 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]