FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6623, 318 aa
  1>>>pF1KE6623 318 - 318 aa - 318 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6493+/-0.000744; mu= 10.1964+/- 0.045
 mean_var=94.9337+/-18.912, 0's: 0 Z-trim(111.0): 2  B-trim: 0 in 0/50
 Lambda= 0.131633
 statistics sampled from 12074 (12075) to 12074 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.371), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS32459.1 COQ9 gene_id:57017|Hs108|chr16         ( 318) 2107 409.8 1.4e-114


>>CCDS32459.1 COQ9 gene_id:57017|Hs108|chr16              (318 aa)
 initn: 2107 init1: 2107 opt: 2107  Z-score: 2170.4  bits: 409.8 E(32554): 1.4e-114
Smith-Waterman score: 2107; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KE6 MAAAAVSGALGRAGWRLLQLRCLPVARCRQALVPRAFHASAVGLRSSDEQKQQPPNSFSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAAAAVSGALGRAGWRLLQLRCLPVARCRQALVPRAFHASAVGLRSSDEQKQQPPNSFSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QHSETQGAEKPDPESSHSPPRYTDQGGEEEEDYESEEQLQHRILTAALEFVPAHGWTAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QHSETQGAEKPDPESSHSPPRYTDQGGEEEEDYESEEQLQHRILTAALEFVPAHGWTAEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 IAEGAQSLGLSSAAASMFGKDGSELILHFVTQCNTRLTRVLEEEQKLVQLGQAEKRKTDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IAEGAQSLGLSSAAASMFGKDGSELILHFVTQCNTRLTRVLEEEQKLVQLGQAEKRKTDQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 FLRDAVETRLRMLIPYIEHWPRALSILMLPHNIPSSLSLLTSMVDDMWHYAGDQSTDFNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FLRDAVETRLRMLIPYIEHWPRALSILMLPHNIPSSLSLLTSMVDDMWHYAGDQSTDFNW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 YTRRAMLAAIYNTTELVMMQDSSPDFEDTWRFLENRVNDAMNMGHTAKQVKSTGEALVQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YTRRAMLAAIYNTTELVMMQDSSPDFEDTWRFLENRVNDAMNMGHTAKQVKSTGEALVQG
              250       260       270       280       290       300

              310        
pF1KE6 LMGAAVTLKNLTGLNQRR
       ::::::::::::::::::
CCDS32 LMGAAVTLKNLTGLNQRR
              310        




318 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:52:45 2016 done: Tue Nov  8 14:52:46 2016
 Total Scan time:  2.370 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]