FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6618, 297 aa
  1>>>pF1KE6618 297 - 297 aa - 297 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7642+/-0.0003; mu= 15.6828+/- 0.019
 mean_var=101.6469+/-20.097, 0's: 0 Z-trim(119.8): 12  B-trim: 36 in 1/51
 Lambda= 0.127212
 statistics sampled from 34188 (34200) to 34188 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.401), width:  16
 Scan time:  6.500

The best scores are:                                      opt bits E(85289)
NP_057444 (OMIM: 220110,612958) translational acti ( 297) 1973 371.8 9.1e-103


>>NP_057444 (OMIM: 220110,612958) translational activato  (297 aa)
 initn: 1973 init1: 1973 opt: 1973  Z-score: 1966.0  bits: 371.8 E(85289): 9.1e-103
Smith-Waterman score: 1973; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KE6 MSAWAAASLSRAAARCLLARGPGVRAAPPRDPRPSHPEPRGCGAAPGRTLHFTAAVPAGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSAWAAASLSRAAARCLLARGPGVRAAPPRDPRPSHPEPRGCGAAPGRTLHFTAAVPAGH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NKWSKVRHIKGPKDVERSRIFSKLCLNIRLAVKEGGPNPEHNSNLANILEVCRSKHMPKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NKWSKVRHIKGPKDVERSRIFSKLCLNIRLAVKEGGPNPEHNSNLANILEVCRSKHMPKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TIETALKMEKSKDTYLLYEGRGPGGSSLLIEALSNSSHKCQADIRHILNKNGGVMAVGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TIETALKMEKSKDTYLLYEGRGPGGSSLLIEALSNSSHKCQADIRHILNKNGGVMAVGAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HSFDKKGVIVVEVEDREKKAVNLERALEMAIEAGAEDVKETEDEEERNVFKFICDASSLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 HSFDKKGVIVVEVEDREKKAVNLERALEMAIEAGAEDVKETEDEEERNVFKFICDASSLH
              190       200       210       220       230       240

              250       260       270       280       290       
pF1KE6 QVRKKLDSLGLCSVSCALEFIPNSKVQLAEPDLEQAAHLIQALSNHEDVIHVYDNIE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 QVRKKLDSLGLCSVSCALEFIPNSKVQLAEPDLEQAAHLIQALSNHEDVIHVYDNIE
              250       260       270       280       290       




297 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:49:43 2016 done: Tue Nov  8 14:49:44 2016
 Total Scan time:  6.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]