FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6618, 297 aa
  1>>>pF1KE6618 297 - 297 aa - 297 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9437+/-0.000707; mu= 14.7381+/- 0.043
 mean_var=102.6276+/-20.477, 0's: 0 Z-trim(112.8): 8  B-trim: 3 in 1/50
 Lambda= 0.126602
 statistics sampled from 13478 (13479) to 13478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.414), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS11640.1 TACO1 gene_id:51204|Hs108|chr17        ( 297) 1973 370.0 1.2e-102


>>CCDS11640.1 TACO1 gene_id:51204|Hs108|chr17             (297 aa)
 initn: 1973 init1: 1973 opt: 1973  Z-score: 1956.5  bits: 370.0 E(32554): 1.2e-102
Smith-Waterman score: 1973; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KE6 MSAWAAASLSRAAARCLLARGPGVRAAPPRDPRPSHPEPRGCGAAPGRTLHFTAAVPAGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSAWAAASLSRAAARCLLARGPGVRAAPPRDPRPSHPEPRGCGAAPGRTLHFTAAVPAGH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NKWSKVRHIKGPKDVERSRIFSKLCLNIRLAVKEGGPNPEHNSNLANILEVCRSKHMPKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NKWSKVRHIKGPKDVERSRIFSKLCLNIRLAVKEGGPNPEHNSNLANILEVCRSKHMPKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TIETALKMEKSKDTYLLYEGRGPGGSSLLIEALSNSSHKCQADIRHILNKNGGVMAVGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TIETALKMEKSKDTYLLYEGRGPGGSSLLIEALSNSSHKCQADIRHILNKNGGVMAVGAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HSFDKKGVIVVEVEDREKKAVNLERALEMAIEAGAEDVKETEDEEERNVFKFICDASSLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HSFDKKGVIVVEVEDREKKAVNLERALEMAIEAGAEDVKETEDEEERNVFKFICDASSLH
              190       200       210       220       230       240

              250       260       270       280       290       
pF1KE6 QVRKKLDSLGLCSVSCALEFIPNSKVQLAEPDLEQAAHLIQALSNHEDVIHVYDNIE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QVRKKLDSLGLCSVSCALEFIPNSKVQLAEPDLEQAAHLIQALSNHEDVIHVYDNIE
              250       260       270       280       290       




297 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:49:42 2016 done: Tue Nov  8 14:49:42 2016
 Total Scan time:  1.710 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]