Result of FASTA (omim) for
pFN21AE6612
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6612, 311 aa
1>>>pF1KE6612 311 - 311 aa - 311 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5238+/-0.000383; mu= 14.2924+/- 0.024
mean_var=66.2590+/-13.539, 0's: 0 Z-trim(111.6): 38 B-trim: 1190 in 1/47
Lambda= 0.157562
statistics sampled from 20236 (20270) to 20236 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.238), width: 16
Scan time: 5.300
The best scores are: opt bits E(85289)
NP_653318 (OMIM: 605621) interleukin-20 receptor s ( 311) 2103 487.1 2e-137
XP_011511212 (OMIM: 605621) PREDICTED: interleukin ( 316) 1900 440.9 1.6e-123
XP_016862121 (OMIM: 605621) PREDICTED: interleukin ( 264) 1790 415.9 4.5e-116
XP_006713728 (OMIM: 605621) PREDICTED: interleukin ( 264) 1790 415.9 4.5e-116
XP_011511213 (OMIM: 605621) PREDICTED: interleukin ( 264) 1790 415.9 4.5e-116
NP_005525 (OMIM: 147569,614889) interferon gamma r ( 337) 191 52.4 1.5e-06
NP_775087 (OMIM: 607404) interferon lambda recepto ( 491) 192 52.7 1.7e-06
NP_734464 (OMIM: 607404) interferon lambda recepto ( 520) 192 52.8 1.8e-06
NP_000619 (OMIM: 123889,610424,612567) interleukin ( 325) 184 50.8 4.3e-06
NP_775088 (OMIM: 607404) interferon lambda recepto ( 244) 180 49.9 6.2e-06
NP_001316057 (OMIM: 147569,614889) interferon gamm ( 356) 176 49.0 1.6e-05
XP_011527856 (OMIM: 147569,614889) PREDICTED: inte ( 339) 170 47.7 4e-05
XP_011527855 (OMIM: 147569,614889) PREDICTED: inte ( 362) 170 47.7 4.2e-05
NP_055247 (OMIM: 605620) interleukin-20 receptor s ( 553) 166 46.9 0.00012
XP_016866443 (OMIM: 605620) PREDICTED: interleukin ( 554) 163 46.2 0.00019
XP_005261021 (OMIM: 107450) PREDICTED: interferon ( 488) 148 42.7 0.0018
NP_000620 (OMIM: 107450) interferon alpha/beta rec ( 557) 148 42.8 0.002
NP_001549 (OMIM: 146933,613148) interleukin-10 rec ( 578) 143 41.6 0.0045
NP_851827 (OMIM: 606648) interleukin-22 receptor s ( 130) 134 39.3 0.0051
>>NP_653318 (OMIM: 605621) interleukin-20 receptor subun (311 aa)
initn: 2103 init1: 2103 opt: 2103 Z-score: 2588.2 bits: 487.1 E(85289): 2e-137
Smith-Waterman score: 2103; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311)
10 20 30 40 50 60
pF1KE6 MQTFTMVLEEIWTSLFMWFFYALIPCLLTDEVAILPAPQNLSVLSTNMKHLLMWSPVIAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 MQTFTMVLEEIWTSLFMWFFYALIPCLLTDEVAILPAPQNLSVLSTNMKHLLMWSPVIAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 GETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 GETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGSQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 TSAWSILKHPFNRNSTILTRPGMEITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 TSAWSILKHPFNRNSTILTRPGMEITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 KMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIPLVLALFAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 KMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIPLVLALFAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 VGFMLILVVVPLFVWKMGRLLQYSCCPVVVLPDTLKITNSPQKLISCRREEVDACATAVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 VGFMLILVVVPLFVWKMGRLLQYSCCPVVVLPDTLKITNSPQKLISCRREEVDACATAVM
250 260 270 280 290 300
310
pF1KE6 SPEELLRAWIS
:::::::::::
NP_653 SPEELLRAWIS
310
>>XP_011511212 (OMIM: 605621) PREDICTED: interleukin-20 (316 aa)
initn: 1900 init1: 1900 opt: 1900 Z-score: 2338.8 bits: 440.9 E(85289): 1.6e-123
Smith-Waterman score: 1900; 100.0% identity (100.0% similar) in 282 aa overlap (30-311:35-316)
10 20 30 40 50
pF1KE6 MQTFTMVLEEIWTSLFMWFFYALIPCLLTDEVAILPAPQNLSVLSTNMKHLLMWSPVIA
::::::::::::::::::::::::::::::
XP_011 KPSIFRLDIFFNDARLISIFLKTPVLNRSGDEVAILPAPQNLSVLSTNMKHLLMWSPVIA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 PGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 QTSAWSILKHPFNRNSTILTRPGMEITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QTSAWSILKHPFNRNSTILTRPGMEITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE6 VKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIPLVLALFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIPLVLALFA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE6 FVGFMLILVVVPLFVWKMGRLLQYSCCPVVVLPDTLKITNSPQKLISCRREEVDACATAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FVGFMLILVVVPLFVWKMGRLLQYSCCPVVVLPDTLKITNSPQKLISCRREEVDACATAV
250 260 270 280 290 300
300 310
pF1KE6 MSPEELLRAWIS
::::::::::::
XP_011 MSPEELLRAWIS
310
>>XP_016862121 (OMIM: 605621) PREDICTED: interleukin-20 (264 aa)
initn: 1790 init1: 1790 opt: 1790 Z-score: 2204.8 bits: 415.9 E(85289): 4.5e-116
Smith-Waterman score: 1790; 100.0% identity (100.0% similar) in 264 aa overlap (48-311:1-264)
20 30 40 50 60 70
pF1KE6 WFFYALIPCLLTDEVAILPAPQNLSVLSTNMKHLLMWSPVIAPGETVYYSVEYQGEYESL
::::::::::::::::::::::::::::::
XP_016 MKHLLMWSPVIAPGETVYYSVEYQGEYESL
10 20 30
80 90 100 110 120 130
pF1KE6 YTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRNSTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRNSTI
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE6 LTRPGMEITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTRPGMEITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEP
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE6 GAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIPLVLALFAFVGFMLILVVVPLFVWKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIPLVLALFAFVGFMLILVVVPLFVWKM
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE6 GRLLQYSCCPVVVLPDTLKITNSPQKLISCRREEVDACATAVMSPEELLRAWIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRLLQYSCCPVVVLPDTLKITNSPQKLISCRREEVDACATAVMSPEELLRAWIS
220 230 240 250 260
>>XP_006713728 (OMIM: 605621) PREDICTED: interleukin-20 (264 aa)
initn: 1790 init1: 1790 opt: 1790 Z-score: 2204.8 bits: 415.9 E(85289): 4.5e-116
Smith-Waterman score: 1790; 100.0% identity (100.0% similar) in 264 aa overlap (48-311:1-264)
20 30 40 50 60 70
pF1KE6 WFFYALIPCLLTDEVAILPAPQNLSVLSTNMKHLLMWSPVIAPGETVYYSVEYQGEYESL
::::::::::::::::::::::::::::::
XP_006 MKHLLMWSPVIAPGETVYYSVEYQGEYESL
10 20 30
80 90 100 110 120 130
pF1KE6 YTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRNSTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRNSTI
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE6 LTRPGMEITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LTRPGMEITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEP
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE6 GAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIPLVLALFAFVGFMLILVVVPLFVWKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIPLVLALFAFVGFMLILVVVPLFVWKM
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE6 GRLLQYSCCPVVVLPDTLKITNSPQKLISCRREEVDACATAVMSPEELLRAWIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GRLLQYSCCPVVVLPDTLKITNSPQKLISCRREEVDACATAVMSPEELLRAWIS
220 230 240 250 260
>>XP_011511213 (OMIM: 605621) PREDICTED: interleukin-20 (264 aa)
initn: 1790 init1: 1790 opt: 1790 Z-score: 2204.8 bits: 415.9 E(85289): 4.5e-116
Smith-Waterman score: 1790; 100.0% identity (100.0% similar) in 264 aa overlap (48-311:1-264)
20 30 40 50 60 70
pF1KE6 WFFYALIPCLLTDEVAILPAPQNLSVLSTNMKHLLMWSPVIAPGETVYYSVEYQGEYESL
::::::::::::::::::::::::::::::
XP_011 MKHLLMWSPVIAPGETVYYSVEYQGEYESL
10 20 30
80 90 100 110 120 130
pF1KE6 YTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRNSTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRNSTI
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE6 LTRPGMEITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTRPGMEITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEP
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE6 GAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIPLVLALFAFVGFMLILVVVPLFVWKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIPLVLALFAFVGFMLILVVVPLFVWKM
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE6 GRLLQYSCCPVVVLPDTLKITNSPQKLISCRREEVDACATAVMSPEELLRAWIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GRLLQYSCCPVVVLPDTLKITNSPQKLISCRREEVDACATAVMSPEELLRAWIS
220 230 240 250 260
>>NP_005525 (OMIM: 147569,614889) interferon gamma recep (337 aa)
initn: 122 init1: 77 opt: 191 Z-score: 238.8 bits: 52.4 E(85289): 1.5e-06
Smith-Waterman score: 262; 27.0% identity (54.3% similar) in 278 aa overlap (11-263:6-279)
10 20 30 40 50 60
pF1KE6 MQTFTMVLEEIWTSLFMWFFYALIPCLLTDEVAILPAPQNLSVLSTNMKHLLMWSPVIAP
.:. :.. .: : .. :::::. .. : ...: : ::
NP_005 MRPTLLWSLLLLLGVFAAAAAAPPDPLSQLPAPQHPKIRLYNAEQVLSWEPVALS
10 20 30 40 50
70 80 90 100 110
pF1KE6 GET--VYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTD-DITATVPYN----LRV
. : : :.:... . .:. : . :. . ::: : . .: :.. ::.
NP_005 NSTRPVVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASPSAGFPMDFNVTLRL
60 70 80 90 100 110
120 130 140 150 160
pF1KE6 RATLGSQTSAWSILK-HPFNRNSTILTRPGMEITKDGFHLVIELE---DLGPQ----FEF
:: ::. ::: . :: :. ..:.: :.:.. :.. : .
NP_005 RAELGALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSSPFDIADTSTAFFCY
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE6 LVAYWRREPGAEEHVKM-VRSGGIPVHLETMEPGAAYCVKAQTFV----KAIGRYSAFSQ
: :: : :. ..:: ::..: :....:. .::...:. . . : : . .:.
NP_005 YVHYW--EKGGIQQVKGPFRSNSIS--LDNLKPSRVYCLQVQAQLLWNKSNIFRVGHLSN
180 190 200 210 220 230
230 240 250 260 270
pF1KE6 TECVEVQGEA-IPLVLALFAFVGFMLILVVVP----LFVWKMGRLLQYSCCPVVVLPDTL
: :....: : ... :: . .: :. ..: :. :..:
NP_005 ISCYETMADASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWFHTPPSIPLQI
240 250 260 270 280 290
280 290 300 310
pF1KE6 KITNSPQKLISCRREEVDACATAVMSPEELLRAWIS
NP_005 EEYLKDPTQPILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL
300 310 320 330
>>NP_775087 (OMIM: 607404) interferon lambda receptor 1 (491 aa)
initn: 135 init1: 90 opt: 192 Z-score: 237.5 bits: 52.7 E(85289): 1.7e-06
Smith-Waterman score: 192; 26.2% identity (53.9% similar) in 256 aa overlap (23-258:10-254)
10 20 30 40 50
pF1KE6 MQTFTMVLEEIWTSLFMWFFYALIPCLLTDEVAI--LPAPQNLSVLSTNMKHLLMWSPVI
:. ::: . : :::...:: :.. : : : .
NP_775 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGL
10 20 30 40
60 70 80 90 100 110
pF1KE6 APGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVT----DDITATVPYNLRVR
. . : : : :: : : . : :. :. :.. .:. .. :::
NP_775 GNPQDVTYFVAYQ----SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNK--FKGRVR
50 60 70 80 90 100
120 130 140 150 160
pF1KE6 ATLGSQTSAW---SILKHPFNRNST----ILTRPGMEITKDG-FHLVIELEDLGPQFEFL
.. :. : : : . :. . . .::. .. .. ..: . : ..:
NP_775 TVSPSSKSPWVESEYLDYLFEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYE--
110 120 130 140 150
170 180 190 200 210 220
pF1KE6 VAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAA--YCVKAQT-FVKAIGRYSAFSQTEC
::.:.. : . : : ::.. :..:.:. .:..:.: .. .. .:: ::. :
NP_775 VAFWKEGAGNKTLFP-VTPHGQPVQI-TLQPAASEHHCLSARTIYTFSVPKYSKFSKPTC
160 170 180 190 200 210
230 240 250 260 270 280
pF1KE6 VEVQ-GEAIPLVLALFAFVGFMLILVVVPLFVWK--MGRLLQYSCCPVVVLPDTLKITNS
.. :: :.: ... ..:..... .:: ::
NP_775 FLLEVPEANWAFLVLPSLL-ILLLVIAAGGVIWKTLMGNPWFQRAKMPRALELTRGVRPT
220 230 240 250 260 270
290 300 310
pF1KE6 PQKLISCRREEVDACATAVMSPEELLRAWIS
NP_775 PRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHSEAGGV
280 290 300 310 320 330
>>NP_734464 (OMIM: 607404) interferon lambda receptor 1 (520 aa)
initn: 135 init1: 90 opt: 192 Z-score: 237.1 bits: 52.8 E(85289): 1.8e-06
Smith-Waterman score: 192; 26.2% identity (53.9% similar) in 256 aa overlap (23-258:10-254)
10 20 30 40 50
pF1KE6 MQTFTMVLEEIWTSLFMWFFYALIPCLLTDEVAI--LPAPQNLSVLSTNMKHLLMWSPVI
:. ::: . : :::...:: :.. : : : .
NP_734 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGL
10 20 30 40
60 70 80 90 100 110
pF1KE6 APGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVT----DDITATVPYNLRVR
. . : : : :: : : . : :. :. :.. .:. .. :::
NP_734 GNPQDVTYFVAYQ----SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNK--FKGRVR
50 60 70 80 90 100
120 130 140 150 160
pF1KE6 ATLGSQTSAW---SILKHPFNRNST----ILTRPGMEITKDG-FHLVIELEDLGPQFEFL
.. :. : : : . :. . . .::. .. .. ..: . : ..:
NP_734 TVSPSSKSPWVESEYLDYLFEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYE--
110 120 130 140 150
170 180 190 200 210 220
pF1KE6 VAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAA--YCVKAQT-FVKAIGRYSAFSQTEC
::.:.. : . : : ::.. :..:.:. .:..:.: .. .. .:: ::. :
NP_734 VAFWKEGAGNKTLFP-VTPHGQPVQI-TLQPAASEHHCLSARTIYTFSVPKYSKFSKPTC
160 170 180 190 200 210
230 240 250 260 270 280
pF1KE6 VEVQ-GEAIPLVLALFAFVGFMLILVVVPLFVWK--MGRLLQYSCCPVVVLPDTLKITNS
.. :: :.: ... ..:..... .:: ::
NP_734 FLLEVPEANWAFLVLPSLL-ILLLVIAAGGVIWKTLMGNPWFQRAKMPRALDFSGHTHPV
220 230 240 250 260 270
290 300 310
pF1KE6 PQKLISCRREEVDACATAVMSPEELLRAWIS
NP_734 ATFQPSRPESVNDLFLCPQKELTRGVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTED
280 290 300 310 320 330
>>NP_000619 (OMIM: 123889,610424,612567) interleukin-10 (325 aa)
initn: 106 init1: 49 opt: 184 Z-score: 230.4 bits: 50.8 E(85289): 4.3e-06
Smith-Waterman score: 279; 26.6% identity (58.0% similar) in 286 aa overlap (12-276:3-267)
10 20 30 40 50
pF1KE6 MQTFTMVLEEIWTSLFMWFFYALIPCLLTDEVAILPAPQNLSVLSTNMKHLLMW-SPVIA
: :: : : :::.. ....: :.:. . :.:.:..:.: ::..:
NP_000 MAW-SLGSW----LGGCLLVSALGMVPPPENVRMNSVNFKNILQWESPAFA
10 20 30 40
60 70 80 90 100 110
pF1KE6 PGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGS
: .. . ..: : : .. : : ::: .. .. ..::::: ...
NP_000 KG-----NLTFTAQYLSYR-----IFQDKCMNTTLTECDFSS-LSKYGDHTLRVRAEFAD
50 60 70 80 90
120 130 140 150 160
pF1KE6 QTSAW-SILKHPFNRNSTILTRPGM--EITKDGFHLV-----IE-------LEDLGPQFE
. : : .: : . .::. ::: :. :..:. :: .... ..
NP_000 EHSDWVNITFCPVD--DTIIGPPGMQVEVLADSLHMRFLAPKIENEYETWTMKNVYNSWT
100 110 120 130 140 150
170 180 190 200 210 220
pF1KE6 FLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECV
. : ::. :..:. ... . . : :...:: ..:::... :. .. . .:. :
NP_000 YNVQYWKN--GTDEKFQITPQYDFEV-LRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCE
160 170 180 190 200 210
230 240 250 260 270
pF1KE6 EV-QGEAIP--LVLALFAFVGFMLILVVVPLF--VWKMGRLLQYSCCPVVVLPDTLKITN
.. . :..: .: ... ::. :... : .: . . .:. : ::. ::
NP_000 QTTHDETVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKEFL
220 230 240 250 260 270
280 290 300 310
pF1KE6 SPQKLISCRREEVDACATAVMSPEELLRAWIS
NP_000 GHPHHNTLLFFSFPLSDENDVFDKLSVIAEDSESGKQNPGDSCSLGTPPGQGPQS
280 290 300 310 320
>>NP_775088 (OMIM: 607404) interferon lambda receptor 1 (244 aa)
initn: 114 init1: 90 opt: 180 Z-score: 227.5 bits: 49.9 E(85289): 6.2e-06
Smith-Waterman score: 180; 27.1% identity (52.9% similar) in 225 aa overlap (23-228:10-224)
10 20 30 40 50
pF1KE6 MQTFTMVLEEIWTSLFMWFFYALIPCLLTDEVAI--LPAPQNLSVLSTNMKHLLMWSPVI
:. ::: . : :::...:: :.. : : : .
NP_775 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGL
10 20 30 40
60 70 80 90 100 110
pF1KE6 APGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVT----DDITATVPYNLRVR
. . : : : :: : : . : :. :. :.. .:. .. :::
NP_775 GNPQDVTYFVAYQ----SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNK--FKGRVR
50 60 70 80 90 100
120 130 140 150 160
pF1KE6 ATLGSQTSAW---SILKHPFNRNST----ILTRPGMEITKDG-FHLVIELEDLGPQFEFL
.. :. : : : . :. . . .::. .. .. ..: . : ..:
NP_775 TVSPSSKSPWVESEYLDYLFEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYE--
110 120 130 140 150
170 180 190 200 210 220
pF1KE6 VAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAA--YCVKAQT-FVKAIGRYSAFSQTEC
::.:.. : . : : ::.. :..:.:. .:..:.: .. .. .:: ::. :
NP_775 VAFWKEGAGNKTLFP-VTPHGQPVQI-TLQPAASEHHCLSARTIYTFSVPKYSKFSKPTC
160 170 180 190 200 210
230 240 250 260 270 280
pF1KE6 --VEVQGEAIPLVLALFAFVGFMLILVVVPLFVWKMGRLLQYSCCPVVVLPDTLKITNSP
.:: :
NP_775 FLLEVPGLFWTHTPCGNLSAQQTRVRE
220 230 240
311 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:46:12 2016 done: Tue Nov 8 14:46:12 2016
Total Scan time: 5.300 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]