Result of FASTA (omim) for
pFN21AE6610
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6610, 260 aa
1>>>pF1KE6610 260 - 260 aa - 260 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0176+/-0.000394; mu= 6.8434+/- 0.024
mean_var=117.5408+/-24.186, 0's: 0 Z-trim(115.4): 17 B-trim: 580 in 2/49
Lambda= 0.118299
statistics sampled from 25826 (25834) to 25826 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.303), width: 16
Scan time: 5.220
The best scores are: opt bits E(85289)
NP_055701 (OMIM: 612497) ribosome biogenesis prote ( 260) 1725 305.2 7.8e-83
XP_011541400 (OMIM: 612497) PREDICTED: ribosome bi ( 271) 1718 304.0 1.9e-82
NP_001258594 (OMIM: 612497) ribosome biogenesis pr ( 189) 1162 209.0 5.1e-54
XP_016864442 (OMIM: 612497) PREDICTED: ribosome bi ( 193) 1162 209.0 5.1e-54
XP_016864441 (OMIM: 612497) PREDICTED: ribosome bi ( 200) 1155 207.8 1.2e-53
>>NP_055701 (OMIM: 612497) ribosome biogenesis protein N (260 aa)
initn: 1725 init1: 1725 opt: 1725 Z-score: 1608.1 bits: 305.2 E(85289): 7.8e-83
Smith-Waterman score: 1725; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)
10 20 30 40 50 60
pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
190 200 210 220 230 240
250 260
pF1KE6 YAQVTNNPENDGCINAVLLV
::::::::::::::::::::
NP_055 YAQVTNNPENDGCINAVLLV
250 260
>>XP_011541400 (OMIM: 612497) PREDICTED: ribosome biogen (271 aa)
initn: 1718 init1: 1718 opt: 1718 Z-score: 1601.4 bits: 304.0 E(85289): 1.9e-82
Smith-Waterman score: 1718; 100.0% identity (100.0% similar) in 259 aa overlap (2-260:13-271)
10 20 30 40
pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKL
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKQEGGIGTVRTPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE6 FIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGL
190 200 210 220 230 240
230 240 250 260
pF1KE6 VTQGGKVIWGKYAQVTNNPENDGCINAVLLV
:::::::::::::::::::::::::::::::
XP_011 VTQGGKVIWGKYAQVTNNPENDGCINAVLLV
250 260 270
>>NP_001258594 (OMIM: 612497) ribosome biogenesis protei (189 aa)
initn: 1162 init1: 1162 opt: 1162 Z-score: 1090.9 bits: 209.0 E(85289): 5.1e-54
Smith-Waterman score: 1162; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174)
10 20 30 40 50 60
pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMENMPRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
NP_001 PTILKMMDV
>>XP_016864442 (OMIM: 612497) PREDICTED: ribosome biogen (193 aa)
initn: 1162 init1: 1162 opt: 1162 Z-score: 1090.7 bits: 209.0 E(85289): 5.1e-54
Smith-Waterman score: 1162; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174)
10 20 30 40 50 60
pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMRRGFTV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
XP_016 LARMVSISVIRPP
190
>>XP_016864441 (OMIM: 612497) PREDICTED: ribosome biogen (200 aa)
initn: 1155 init1: 1155 opt: 1155 Z-score: 1084.0 bits: 207.8 E(85289): 1.2e-53
Smith-Waterman score: 1155; 100.0% identity (100.0% similar) in 173 aa overlap (2-174:13-185)
10 20 30 40
pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKL
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKQEGGIGTVRTPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE6 FIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGL
:::::
XP_016 FIRPMENMPRLPTILKMMDV
190 200
260 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:45:10 2016 done: Tue Nov 8 14:45:11 2016
Total Scan time: 5.220 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]