FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6609, 299 aa
  1>>>pF1KE6609 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3985+/-0.000937; mu= 14.4057+/- 0.057
 mean_var=58.4712+/-12.375, 0's: 0 Z-trim(104.6): 23  B-trim: 442 in 1/47
 Lambda= 0.167727
 statistics sampled from 7973 (7985) to 7973 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.245), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS8435.1 SC5D gene_id:6309|Hs108|chr11           ( 299) 2086 513.1 9.8e-146
CCDS3809.1 MSMO1 gene_id:6307|Hs108|chr4           ( 293)  279 75.9 4.1e-14
CCDS43280.1 MSMO1 gene_id:6307|Hs108|chr4          ( 162)  273 74.4 6.5e-14


>>CCDS8435.1 SC5D gene_id:6309|Hs108|chr11                (299 aa)
 initn: 2086 init1: 2086 opt: 2086  Z-score: 2729.9  bits: 513.1 E(32554): 9.8e-146
Smith-Waterman score: 2086; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KE6 MDLVLRVADYYFFTPYVYPATWPEDDIFRQAISLLIVTNVGAYILYFFCATLSYYFVFDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MDLVLRVADYYFFTPYVYPATWPEDDIFRQAISLLIVTNVGAYILYFFCATLSYYFVFDH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ALMKHPQFLKNQVRREIKFTVQALPWISILTVALFLLEIRGYSKLHDDLGEFPYGLFELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 ALMKHPQFLKNQVRREIKFTVQALPWISILTVALFLLEIRGYSKLHDDLGEFPYGLFELV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VSIISFLFFTDMFIYWIHRGLHHRLVYKRLHKPHHIWKIPTPFASHAFHPIDGFLQSLPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VSIISFLFFTDMFIYWIHRGLHHRLVYKRLHKPHHIWKIPTPFASHAFHPIDGFLQSLPY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HIYPFIFPLHKVVYLSLYILVNIWTISIHDGDFRVPQILQPFINGSAHHTDHHMFFDYNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 HIYPFIFPLHKVVYLSLYILVNIWTISIHDGDFRVPQILQPFINGSAHHTDHHMFFDYNY
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KE6 GQYFTLWDRIGGSFKNPSSFEGKGPLSYVKEMTEGKRSSHSGNGCKNEKLFNGEFTKTE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 GQYFTLWDRIGGSFKNPSSFEGKGPLSYVKEMTEGKRSSHSGNGCKNEKLFNGEFTKTE
              250       260       270       280       290         

>>CCDS3809.1 MSMO1 gene_id:6307|Hs108|chr4                (293 aa)
 initn: 268 init1: 152 opt: 279  Z-score: 366.9  bits: 75.9 E(32554): 4.1e-14
Smith-Waterman score: 279; 29.5% identity (55.1% similar) in 234 aa overlap (45-263:61-284)

           20        30        40         50        60             
pF1KE6 PYVYPATWPEDDIFRQAISLLIVTNVGAYILYF-FCATLSYYFVFDHALMKH------PQ
                                     ::: ::   .. : :   . :.      :.
CCDS38 EPFKNAWNYMLNNYTKFQIATWGSLIVHEALYFLFCLP-GFLFQFIPYMKKYKIQKDKPE
               40        50        60         70        80         

        70             80        90       100       110       120  
pF1KE6 FLKNQ-----VRREIKFTVQALPWISILTVALFLLEIRGYSKLHDDLGEFPYGLFELVVS
         .::     :    .: .: ::   ..  . .. :   : ..  :  ..:   : :.. 
CCDS38 TWENQWKCFKVLLFNHFCIQ-LP---LICGTYYFTE---YFNIPYDWERMPRWYF-LLAR
      90       100        110          120          130        140 

            130       140       150       160       170       180  
pF1KE6 IISFLFFTDMFIYWIHRGLHHRLVYKRLHKPHHIWKIPTPFASHAFHPIDGFLQSLPYHI
        ..   . : . :..:: :::. .:: .:: :: .. :  . ..  ::.. .. .  . :
CCDS38 CFGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPFGMEAEYAHPLETLILGTGFFI
             150       160       170       180       190       200 

            190       200        210         220       230         
pF1KE6 YPFIFPLHKVVYLSLYILVNIW-TISIHDG-DFRV-PQILQPFINGSAHHTDHHMFFDYN
          ..  : :. :  .. . .  ::..:.: :. . :  : ::  :: ::  ::: :  :
CCDS38 GIVLLCDH-VILLWAWVTIRLLETIDVHSGYDIPLNPLNLIPFYAGSRHHDFHHMNFIGN
              210       220       230       240       250       260

     240       250       260       270       280       290         
pF1KE6 YGQYFTLWDRIGGSFKNPSSFEGKGPLSYVKEMTEGKRSSHSGNGCKNEKLFNGEFTKTE
       :.. :: :::: :. .. .... :                                    
CCDS38 YASTFTWWDRIFGTDSQYNAYNEKRKKFEKKTE                           
              270       280       290                              

>>CCDS43280.1 MSMO1 gene_id:6307|Hs108|chr4               (162 aa)
 initn: 268 init1: 152 opt: 273  Z-score: 363.2  bits: 74.4 E(32554): 6.5e-14
Smith-Waterman score: 273; 34.6% identity (62.5% similar) in 136 aa overlap (131-263:19-153)

              110       120       130       140       150       160
pF1KE6 GYSKLHDDLGEFPYGLFELVVSIISFLFFTDMFIYWIHRGLHHRLVYKRLHKPHHIWKIP
                                     : . :..:: :::. .:: .:: :: .. :
CCDS43             MPRWYFLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAP
                           10        20        30        40        

              170       180       190       200        210         
pF1KE6 TPFASHAFHPIDGFLQSLPYHIYPFIFPLHKVVYLSLYILVNIW-TISIHDG-DFRV-PQ
         . ..  ::.. .. .  . :   ..  : :. :  .. . .  ::..:.: :. . : 
CCDS43 FGMEAEYAHPLETLILGTGFFIGIVLLCDH-VILLWAWVTIRLLETIDVHSGYDIPLNPL
       50        60        70         80        90       100       

       220       230       240       250       260       270       
pF1KE6 ILQPFINGSAHHTDHHMFFDYNYGQYFTLWDRIGGSFKNPSSFEGKGPLSYVKEMTEGKR
        : ::  :: ::  ::: :  ::.. :: :::: :. .. .... :              
CCDS43 NLIPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDSQYNAYNEKRKKFEKKTE     
       110       120       130       140       150       160       

       280       290         
pF1KE6 SSHSGNGCKNEKLFNGEFTKTE




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:44:30 2016 done: Tue Nov  8 14:44:30 2016
 Total Scan time:  1.530 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]