FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6594, 72 aa
  1>>>pF1KE6594 72 - 72 aa - 72 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8760+/-0.000215; mu= 10.1512+/- 0.014
 mean_var=56.5251+/-11.127, 0's: 0 Z-trim(124.8): 2  B-trim: 0 in 0/53
 Lambda= 0.170590
 statistics sampled from 47059 (47061) to 47059 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.87), E-opt: 0.2 (0.552), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(85289)
NP_892016 (OMIM: 616855) cytochrome c oxidase subu (  72)  492 127.5 1.9e-30
NP_004065 (OMIM: 123870) cytochrome c oxidase subu (  69)  137 40.1 0.00036


>>NP_892016 (OMIM: 616855) cytochrome c oxidase subunit   (72 aa)
 initn: 492 init1: 492 opt: 492  Z-score: 667.8  bits: 127.5 E(85289): 1.9e-30
Smith-Waterman score: 492; 100.0% identity (100.0% similar) in 72 aa overlap (1-72:1-72)

               10        20        30        40        50        60
pF1KE6 MPLLRGRCPARRHYRRLALLGLQPAPRFAHSGPPRQRPLSAAEMAVGLVVFFTTFLTPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_892 MPLLRGRCPARRHYRRLALLGLQPAPRFAHSGPPRQRPLSAAEMAVGLVVFFTTFLTPAA
               10        20        30        40        50        60

               70  
pF1KE6 YVLGNLKQFRRN
       ::::::::::::
NP_892 YVLGNLKQFRRN
               70  

>>NP_004065 (OMIM: 123870) cytochrome c oxidase subunit   (69 aa)
 initn: 141 init1: 125 opt: 137  Z-score: 195.9  bits: 40.1 E(85289): 0.00036
Smith-Waterman score: 137; 46.9% identity (75.5% similar) in 49 aa overlap (24-71:20-67)

               10        20         30        40        50         
pF1KE6 MPLLRGRCPARRHYRRLALLGLQPAPRFA-HSGPPRQRPLSAAEMAVGLVVFFTTFLTPA
                              :.::   :: ::. . :.  :.::::.  :.::: ::
NP_004     MSVLTPLLLRGLTGSARRLPVPRAKIHSLPPEGK-LGIMELAVGLTSCFVTFLLPA
                   10        20        30         40        50     

      60        70   
pF1KE6 AYVLGNLKQFRRN 
       ...:..:. .::  
NP_004 GWILSHLETYRRPE
          60         




72 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:39:37 2016 done: Tue Nov  8 14:39:37 2016
 Total Scan time:  2.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]