FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6592, 202 aa
  1>>>pF1KE6592 202 - 202 aa - 202 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9530+/-0.000701; mu= 8.3955+/- 0.043
 mean_var=143.8532+/-28.503, 0's: 0 Z-trim(115.8): 5  B-trim: 148 in 1/54
 Lambda= 0.106934
 statistics sampled from 16370 (16372) to 16370 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.503), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS12656.1 BLOC1S3 gene_id:388552|Hs108|chr19     ( 202) 1321 213.9 5.2e-56


>>CCDS12656.1 BLOC1S3 gene_id:388552|Hs108|chr19          (202 aa)
 initn: 1321 init1: 1321 opt: 1321  Z-score: 1119.0  bits: 213.9 E(32554): 5.2e-56
Smith-Waterman score: 1321; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KE6 MASQGRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MASQGRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DHDVAAAVSGVYRRAGRDVAALASRLAAAQAAGLAAAHSVRLARGDLCALAERLDIVAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DHDVAAAVSGVYRRAGRDVAALASRLAAAQAAGLAAAHSVRLARGDLCALAERLDIVAGC
              130       140       150       160       170       180

              190       200  
pF1KE6 RLLPDIRGVPGTEPEKDPGPRA
       ::::::::::::::::::::::
CCDS12 RLLPDIRGVPGTEPEKDPGPRA
              190       200  




202 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:38:44 2016 done: Tue Nov  8 14:38:44 2016
 Total Scan time:  2.200 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]