Result of FASTA (ccds) for
pFN21AE6586
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6586, 166 aa
1>>>pF1KE6586 166 - 166 aa - 166 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3203+/-0.000791; mu= 4.7188+/- 0.048
mean_var=176.5119+/-37.380, 0's: 0 Z-trim(114.6): 26 B-trim: 0 in 0/51
Lambda= 0.096536
statistics sampled from 15139 (15161) to 15139 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.466), width: 16
Scan time: 1.080
The best scores are: opt bits E(32554)
CCDS14425.1 ZCCHC13 gene_id:389874|Hs108|chrX ( 166) 1258 186.0 9e-48
CCDS54637.1 CNBP gene_id:7555|Hs108|chr3 ( 170) 757 116.3 9.3e-27
CCDS46908.1 CNBP gene_id:7555|Hs108|chr3 ( 172) 748 115.0 2.2e-26
CCDS3056.1 CNBP gene_id:7555|Hs108|chr3 ( 177) 744 114.5 3.3e-26
CCDS46907.1 CNBP gene_id:7555|Hs108|chr3 ( 178) 732 112.8 1.1e-25
CCDS46906.1 CNBP gene_id:7555|Hs108|chr3 ( 179) 626 98.0 3e-21
>>CCDS14425.1 ZCCHC13 gene_id:389874|Hs108|chrX (166 aa)
initn: 1258 init1: 1258 opt: 1258 Z-score: 971.1 bits: 186.0 E(32554): 9e-48
Smith-Waterman score: 1258; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
pF1KE6 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGH
70 80 90 100 110 120
130 140 150 160
pF1KE6 IQKDCAQVKCYRCGEIGHVAINCSKARPGQLLPLRQIPTSSQGMSQ
::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IQKDCAQVKCYRCGEIGHVAINCSKARPGQLLPLRQIPTSSQGMSQ
130 140 150 160
>>CCDS54637.1 CNBP gene_id:7555|Hs108|chr3 (170 aa)
initn: 757 init1: 757 opt: 757 Z-score: 593.9 bits: 116.3 E(32554): 9.3e-27
Smith-Waterman score: 757; 68.3% identity (82.8% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KE6 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC
:::.. : ::.:::::: :: ::. :: ..::: : :..: :: :::::. ::.:
CCDS54 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGH
: . ::::::.::::::::.:::::.: ::.::. ::::::::. ::::::::..::
CCDS54 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH
70 80 90 100 110 120
130 140 150 160
pF1KE6 IQKDCAQVKCYRCGEIGHVAINCSKARPGQLLPLRQIPTSSQGMSQ
:::::..:::::::: :::::::::
CCDS54 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
130 140 150 160 170
>>CCDS46908.1 CNBP gene_id:7555|Hs108|chr3 (172 aa)
initn: 747 init1: 518 opt: 748 Z-score: 587.1 bits: 115.0 E(32554): 2.2e-26
Smith-Waterman score: 748; 67.3% identity (82.3% similar) in 147 aa overlap (1-145:1-147)
10 20 30 40 50 60
pF1KE6 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC
:::.. : ::.:::::: :: ::. :: ..::: : :..: :: :::::. ::.:
CCDS46 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 VLLGNI--CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKL
: .. ::::::.::::::::.:::::.: ::.::. ::::::::. ::::::::..
CCDS46 DLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEF
70 80 90 100 110 120
120 130 140 150 160
pF1KE6 GHIQKDCAQVKCYRCGEIGHVAINCSKARPGQLLPLRQIPTSSQGMSQ
:::::::..:::::::: :::::::::
CCDS46 GHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
130 140 150 160 170
>>CCDS3056.1 CNBP gene_id:7555|Hs108|chr3 (177 aa)
initn: 661 init1: 628 opt: 744 Z-score: 583.9 bits: 114.5 E(32554): 3.3e-26
Smith-Waterman score: 744; 66.4% identity (80.3% similar) in 152 aa overlap (1-145:1-152)
10 20 30 40 50
pF1KE6 MSSKDFFACGHSGHWARGCPRGGAGGR--RGGGHG-----RGSQCGSTTLSYTCYCCGES
:::.. : ::.:::::: :: ::. :: :. :.: :: : :..: :: ::::
CCDS30 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 GRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCY
:. ::.: : . ::::::.::::::::.:::::.: ::.::. ::::::::. :::::
CCDS30 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
70 80 90 100 110 120
120 130 140 150 160
pF1KE6 SCGKLGHIQKDCAQVKCYRCGEIGHVAINCSKARPGQLLPLRQIPTSSQGMSQ
:::..:::::::..:::::::: :::::::::
CCDS30 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
130 140 150 160 170
>>CCDS46907.1 CNBP gene_id:7555|Hs108|chr3 (178 aa)
initn: 760 init1: 518 opt: 732 Z-score: 574.8 bits: 112.8 E(32554): 1.1e-25
Smith-Waterman score: 732; 66.0% identity (79.7% similar) in 153 aa overlap (1-145:1-153)
10 20 30 40 50
pF1KE6 MSSKDFFACGHSGHWARGCPRGGAGGR--RGGGHG-----RGSQCGSTTLSYTCYCCGES
:::.. : ::.:::::: :: ::. :: :. :.: :: : :..: :: ::::
CCDS46 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 GRNAKNCVLLGN-ICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKC
:. ::.: : . ::::::.::::::::.:::::.: ::.::. ::::::::. ::::
CCDS46 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
70 80 90 100 110 120
120 130 140 150 160
pF1KE6 YSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSKARPGQLLPLRQIPTSSQGMSQ
::::..:::::::..:::::::: :::::::::
CCDS46 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
130 140 150 160 170
>>CCDS46906.1 CNBP gene_id:7555|Hs108|chr3 (179 aa)
initn: 760 init1: 518 opt: 626 Z-score: 495.0 bits: 98.0 E(32554): 3e-21
Smith-Waterman score: 735; 65.6% identity (79.9% similar) in 154 aa overlap (1-145:1-154)
10 20 30 40 50
pF1KE6 MSSKDFFACGHSGHWARGCPRGGAGGR--RGGGHG-----RGSQCGSTTLSYTCYCCGES
:::.. : ::.:::::: :: ::. :: :. :.: :: : :..: :: ::::
CCDS46 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 GRNAKNCVLLGNI--CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQK
:. ::.: : .. ::::::.::::::::.:::::.: ::.::. ::::::::. :::
CCDS46 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
70 80 90 100 110 120
120 130 140 150 160
pF1KE6 CYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSKARPGQLLPLRQIPTSSQGMSQ
:::::..:::::::..:::::::: :::::::::
CCDS46 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
130 140 150 160 170
166 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:36:05 2016 done: Tue Nov 8 14:36:05 2016
Total Scan time: 1.080 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]