Result of FASTA (omim) for
pFN21AE6579
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6579, 144 aa
1>>>pF1KE6579 144 - 144 aa - 144 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9647+/-0.000266; mu= 1.3952+/- 0.017
mean_var=164.4770+/-34.497, 0's: 0 Z-trim(124.8): 7 B-trim: 1508 in 2/55
Lambda= 0.100005
statistics sampled from 47259 (47268) to 47259 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.857), E-opt: 0.2 (0.554), width: 16
Scan time: 3.780
The best scores are: opt bits E(85289)
NP_001094090 (OMIM: 603872) tastin isoform 2 [Homo ( 144) 1012 156.1 1.8e-38
NP_001265253 (OMIM: 603872) tastin isoform 3 [Homo ( 126) 778 122.3 2.3e-28
XP_011536027 (OMIM: 603872) PREDICTED: tastin isof ( 126) 778 122.3 2.3e-28
NP_005471 (OMIM: 603872) tastin isoform 1 [Homo sa ( 778) 786 124.0 4.5e-28
XP_011536025 (OMIM: 603872) PREDICTED: tastin isof ( 823) 786 124.0 4.7e-28
XP_006719244 (OMIM: 603872) PREDICTED: tastin isof ( 868) 786 124.0 4.9e-28
>>NP_001094090 (OMIM: 603872) tastin isoform 2 [Homo sap (144 aa)
initn: 1012 init1: 1012 opt: 1012 Z-score: 811.7 bits: 156.1 E(85289): 1.8e-38
Smith-Waterman score: 1012; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
pF1KE6 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK
70 80 90 100 110 120
130 140
pF1KE6 LFALRRSPFPPAKCHLARCHGLYL
::::::::::::::::::::::::
NP_001 LFALRRSPFPPAKCHLARCHGLYL
130 140
>>NP_001265253 (OMIM: 603872) tastin isoform 3 [Homo sap (126 aa)
initn: 778 init1: 778 opt: 778 Z-score: 630.1 bits: 122.3 E(85289): 2.3e-28
Smith-Waterman score: 778; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KE6 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTGAMACTCN
70 80 90 100 110 120
130 140
pF1KE6 LFALRRSPFPPAKCHLARCHGLYL
NP_001 HSYSGG
>>XP_011536027 (OMIM: 603872) PREDICTED: tastin isoform (126 aa)
initn: 778 init1: 778 opt: 778 Z-score: 630.1 bits: 122.3 E(85289): 2.3e-28
Smith-Waterman score: 778; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KE6 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTGAMACTCN
70 80 90 100 110 120
130 140
pF1KE6 LFALRRSPFPPAKCHLARCHGLYL
XP_011 HSYSGG
>>NP_005471 (OMIM: 603872) tastin isoform 1 [Homo sapien (778 aa)
initn: 831 init1: 778 opt: 786 Z-score: 625.0 bits: 124.0 E(85289): 4.5e-28
Smith-Waterman score: 786; 82.9% identity (85.6% similar) in 146 aa overlap (1-138:1-143)
10 20 30 40 50 60
pF1KE6 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::
NP_005 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQT---EAPGT
70 80 90 100 110
130 140
pF1KE6 L--------FALRRSPFPPAKCHLARCHGLYL
. .: : .:::.:
NP_005 IEFVADPAALATILSGEGVKSCHLGRQPSLAKRVLVRGSQGGTTQRVQGVRASAYLAPRT
120 130 140 150 160 170
>>XP_011536025 (OMIM: 603872) PREDICTED: tastin isoform (823 aa)
initn: 831 init1: 778 opt: 786 Z-score: 624.7 bits: 124.0 E(85289): 4.7e-28
Smith-Waterman score: 786; 82.9% identity (85.6% similar) in 146 aa overlap (1-138:1-143)
10 20 30 40 50 60
pF1KE6 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::
XP_011 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQT---EAPGT
70 80 90 100 110
130 140
pF1KE6 L--------FALRRSPFPPAKCHLARCHGLYL
. .: : .:::.:
XP_011 IEFVADPAALATILSGEGVKSCHLGRQPSLAKRVLVRGSQGGTTQRVQGVRASAYLAPRT
120 130 140 150 160 170
>>XP_006719244 (OMIM: 603872) PREDICTED: tastin isoform (868 aa)
initn: 831 init1: 778 opt: 786 Z-score: 624.4 bits: 124.0 E(85289): 4.9e-28
Smith-Waterman score: 786; 82.9% identity (85.6% similar) in 146 aa overlap (1-138:1-143)
10 20 30 40 50 60
pF1KE6 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::
XP_006 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQT---EAPGT
70 80 90 100 110
130 140
pF1KE6 L--------FALRRSPFPPAKCHLARCHGLYL
. .: : .:::.:
XP_006 IEFVADPAALATILSGEGVKSCHLGRQPSLAKRVLVRGSQGGTTQRVQGVRASAYLAPRT
120 130 140 150 160 170
144 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:33:45 2016 done: Tue Nov 8 14:33:45 2016
Total Scan time: 3.780 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]