FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6579, 144 aa
  1>>>pF1KE6579 144 - 144 aa - 144 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5564+/-0.00064; mu= 3.5463+/- 0.039
 mean_var=150.4980+/-30.345, 0's: 0 Z-trim(117.2): 7  B-trim: 136 in 1/52
 Lambda= 0.104546
 statistics sampled from 17937 (17944) to 17937 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.86), E-opt: 0.2 (0.551), width:  16
 Scan time:  1.560

The best scores are:                                      opt bits E(32554)
CCDS41779.1 TROAP gene_id:10024|Hs108|chr12        ( 144) 1012 162.5 8.3e-41
CCDS61117.1 TROAP gene_id:10024|Hs108|chr12        ( 126)  778 127.1 3.2e-30
CCDS8784.1 TROAP gene_id:10024|Hs108|chr12         ( 778)  786 128.9 5.8e-30


>>CCDS41779.1 TROAP gene_id:10024|Hs108|chr12             (144 aa)
 initn: 1012 init1: 1012 opt: 1012  Z-score: 846.1  bits: 162.5 E(32554): 8.3e-41
Smith-Waterman score: 1012; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KE6 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK
               70        80        90       100       110       120

              130       140    
pF1KE6 LFALRRSPFPPAKCHLARCHGLYL
       ::::::::::::::::::::::::
CCDS41 LFALRRSPFPPAKCHLARCHGLYL
              130       140    

>>CCDS61117.1 TROAP gene_id:10024|Hs108|chr12             (126 aa)
 initn: 778 init1: 778 opt: 778  Z-score: 656.1  bits: 127.1 E(32554): 3.2e-30
Smith-Waterman score: 778; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KE6 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS61 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTGAMACTCN
               70        80        90       100       110       120

              130       140    
pF1KE6 LFALRRSPFPPAKCHLARCHGLYL
                               
CCDS61 HSYSGG                  
                               

>>CCDS8784.1 TROAP gene_id:10024|Hs108|chr12              (778 aa)
 initn: 831 init1: 778 opt: 786  Z-score: 651.5  bits: 128.9 E(32554): 5.8e-30
Smith-Waterman score: 786; 82.9% identity (85.6% similar) in 146 aa overlap (1-138:1-143)

               10        20        30        40        50        60
pF1KE6 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::    ::: 
CCDS87 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQT---EAPGT
               70        80        90       100       110          

                      130       140                                
pF1KE6 L--------FALRRSPFPPAKCHLARCHGLYL                            
       .        .:   :     .:::.:                                  
CCDS87 IEFVADPAALATILSGEGVKSCHLGRQPSLAKRVLVRGSQGGTTQRVQGVRASAYLAPRT
       120       130       140       150       160       170       




144 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:33:44 2016 done: Tue Nov  8 14:33:44 2016
 Total Scan time:  1.560 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]