FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6576, 107 aa
  1>>>pF1KE6576 107 - 107 aa - 107 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2929+/-0.0005; mu= 11.0219+/- 0.030
 mean_var=71.6083+/-14.499, 0's: 0 Z-trim(116.1): 8  B-trim: 39 in 2/48
 Lambda= 0.151563
 statistics sampled from 16639 (16647) to 16639 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.849), E-opt: 0.2 (0.511), width:  16
 Scan time:  1.290

The best scores are:                                      opt bits E(32554)
CCDS59373.1 C19orf12 gene_id:83636|Hs108|chr19     ( 107)  740 169.3 4.1e-43
CCDS12418.2 C19orf12 gene_id:83636|Hs108|chr19     ( 141)  636 146.6 3.6e-36
CCDS42542.1 C19orf12 gene_id:83636|Hs108|chr19     ( 152)  636 146.6 3.8e-36


>>CCDS59373.1 C19orf12 gene_id:83636|Hs108|chr19          (107 aa)
 initn: 740 init1: 740 opt: 740  Z-score: 887.5  bits: 169.3 E(32554): 4.1e-43
Smith-Waterman score: 740; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)

               10        20        30        40        50        60
pF1KE6 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL
               10        20        30        40        50        60

               70        80        90       100       
pF1KE6 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW
               70        80        90       100       

>>CCDS12418.2 C19orf12 gene_id:83636|Hs108|chr19          (141 aa)
 initn: 636 init1: 636 opt: 636  Z-score: 762.8  bits: 146.6 E(32554): 3.6e-36
Smith-Waterman score: 636; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE6 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL
               10        20        30        40        50        60

               70        80        90       100                    
pF1KE6 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW             
       :::::::::::::::::::::::::::::::::::::                       
CCDS12 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRHLEWTDAVQLTALVMGSEALQQQ
               70        80        90       100       110       120

CCDS12 LLAMLVNYVTKELRAEIQYDD
              130       140 

>>CCDS42542.1 C19orf12 gene_id:83636|Hs108|chr19          (152 aa)
 initn: 636 init1: 636 opt: 636  Z-score: 762.4  bits: 146.6 E(32554): 3.8e-36
Smith-Waterman score: 636; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:12-108)

                          10        20        30        40         
pF1KE6            MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPP
                  :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MERLKSHKPATMTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPP
               10        20        30        40        50        60

      50        60        70        80        90       100         
pF1KE6 GLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW  
       ::::::::::::::::::::::::::::::::::::::::::::::::            
CCDS42 GLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRHLEWTDAVQLTA
               70        80        90       100       110       120

CCDS42 LVMGSEALQQQLLAMLVNYVTKELRAEIQYDD
              130       140       150  




107 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:32:20 2016 done: Tue Nov  8 14:32:21 2016
 Total Scan time:  1.290 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]