FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6571, 145 aa
  1>>>pF1KE6571 145 - 145 aa - 145 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0560+/-0.000597; mu= 12.4646+/- 0.036
 mean_var=58.4681+/-11.593, 0's: 0 Z-trim(111.1): 12  B-trim: 0 in 0/51
 Lambda= 0.167732
 statistics sampled from 12137 (12140) to 12137 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.373), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS9050.1 NDUFA12 gene_id:55967|Hs108|chr12       ( 145) 1028 256.3 4.9e-69
CCDS58263.1 NDUFA12 gene_id:55967|Hs108|chr12      (  63)  382 99.8 2.8e-22


>>CCDS9050.1 NDUFA12 gene_id:55967|Hs108|chr12            (145 aa)
 initn: 1028 init1: 1028 opt: 1028  Z-score: 1352.9  bits: 256.3 E(32554): 4.9e-69
Smith-Waterman score: 1028; 99.3% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KE6 MELVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MELVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 WVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLAARKFIWTNHKFNVTGT
       :::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS90 WVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGT
               70        80        90       100       110       120

              130       140     
pF1KE6 PEQYVPYSTTRKKIQEWIPPSTPYK
       :::::::::::::::::::::::::
CCDS90 PEQYVPYSTTRKKIQEWIPPSTPYK
              130       140     

>>CCDS58263.1 NDUFA12 gene_id:55967|Hs108|chr12           (63 aa)
 initn: 382 init1: 382 opt: 382  Z-score: 513.6  bits: 99.8 E(32554): 2.8e-22
Smith-Waterman score: 382; 100.0% identity (100.0% similar) in 57 aa overlap (1-57:1-57)

               10        20        30        40        50        60
pF1KE6 MELVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS58 MELVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGIVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 WVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLAARKFIWTNHKFNVTGT
                                                                   
CCDS58 FTV                                                         
                                                                   




145 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:30:21 2016 done: Tue Nov  8 14:30:22 2016
 Total Scan time:  1.710 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]