FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6566, 184 aa
  1>>>pF1KE6566 184 - 184 aa - 184 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8338+/-0.000286; mu= 15.2877+/- 0.018
 mean_var=59.6568+/-12.016, 0's: 0 Z-trim(117.4): 3  B-trim: 0 in 0/51
 Lambda= 0.166052
 statistics sampled from 29284 (29287) to 29284 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.343), width:  16
 Scan time:  5.170

The best scores are:                                      opt bits E(85289)
NP_006699 (OMIM: 138750) lactoylglutathione lyase  ( 184) 1269 311.7 4.2e-85


>>NP_006699 (OMIM: 138750) lactoylglutathione lyase [Hom  (184 aa)
 initn: 1269 init1: 1269 opt: 1269  Z-score: 1648.9  bits: 311.7 E(85289): 4.2e-85
Smith-Waterman score: 1269; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KE6 MAEPQPPSGGLTDEAALSCCSDADPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAEPQPPSGGLTDEAALSCCSDADPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 CDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDETQSYHNGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 CDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDETQSYHNGNS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKM
              130       140       150       160       170       180

           
pF1KE6 ATLM
       ::::
NP_006 ATLM
           




184 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:28:04 2016 done: Tue Nov  8 14:28:05 2016
 Total Scan time:  5.170 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]