FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6565, 173 aa
  1>>>pF1KE6565 173 - 173 aa - 173 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1579+/-0.000356; mu= 13.6579+/- 0.022
 mean_var=66.9036+/-13.768, 0's: 0 Z-trim(115.1): 26  B-trim: 919 in 1/52
 Lambda= 0.156801
 statistics sampled from 25285 (25298) to 25285 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.297), width:  16
 Scan time:  4.010

The best scores are:                                      opt bits E(85289)
NP_001153773 (OMIM: 274270,612779) dihydropyrimidi ( 173) 1186 276.6 1.3e-74
XP_006710460 (OMIM: 274270,612779) PREDICTED: dihy ( 889) 1115 261.0 3.5e-69
XP_005270619 (OMIM: 274270,612779) PREDICTED: dihy ( 953) 1115 261.1 3.7e-69
NP_000101 (OMIM: 274270,612779) dihydropyrimidine  (1025) 1115 261.1 3.9e-69
XP_016855996 (OMIM: 274270,612779) PREDICTED: dihy ( 988)  777 184.6 3.9e-46


>>NP_001153773 (OMIM: 274270,612779) dihydropyrimidine d  (173 aa)
 initn: 1186 init1: 1186 opt: 1186  Z-score: 1460.3  bits: 276.6 E(85289): 1.3e-74
Smith-Waterman score: 1186; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)

               10        20        30        40        50        60
pF1KE6 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
               70        80        90       100       110       120

              130       140       150       160       170   
pF1KE6 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL
              130       140       150       160       170   

>>XP_006710460 (OMIM: 274270,612779) PREDICTED: dihydrop  (889 aa)
 initn: 1137 init1: 1115 opt: 1115  Z-score: 1363.1  bits: 261.0 E(85289): 3.5e-69
Smith-Waterman score: 1115; 98.8% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KE6 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE6 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL       
       :::::::::::::::::::::::::::::::::::::::::..                 
XP_006 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPE
              130       140       150       160       170       180

XP_006 KMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDV
              190       200       210       220       230       240

>>XP_005270619 (OMIM: 274270,612779) PREDICTED: dihydrop  (953 aa)
 initn: 1137 init1: 1115 opt: 1115  Z-score: 1362.7  bits: 261.1 E(85289): 3.7e-69
Smith-Waterman score: 1115; 98.8% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KE6 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE6 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL       
       :::::::::::::::::::::::::::::::::::::::::..                 
XP_005 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPE
              130       140       150       160       170       180

XP_005 KMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDV
              190       200       210       220       230       240

>>NP_000101 (OMIM: 274270,612779) dihydropyrimidine dehy  (1025 aa)
 initn: 1137 init1: 1115 opt: 1115  Z-score: 1362.2  bits: 261.1 E(85289): 3.9e-69
Smith-Waterman score: 1115; 98.8% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KE6 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE6 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL       
       :::::::::::::::::::::::::::::::::::::::::..                 
NP_000 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPE
              130       140       150       160       170       180

NP_000 KMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDV
              190       200       210       220       230       240

>>XP_016855996 (OMIM: 274270,612779) PREDICTED: dihydrop  (988 aa)
 initn: 866 init1: 777 opt: 777  Z-score: 949.2  bits: 184.6 E(85289): 3.9e-46
Smith-Waterman score: 777; 98.2% identity (100.0% similar) in 113 aa overlap (51-163:14-126)

               30        40        50        60        70        80
pF1KE6 RTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFDDIKHTTLGERGALREAMRCL
                                     ::::::::::::::::::::::::::::::
XP_016                  MAPVLSKDSADIENCEKLENNFDDIKHTTLGERGALREAMRCL
                                10        20        30        40   

               90       100       110       120       130       140
pF1KE6 KCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGC
            50        60        70        80        90       100   

              150       160       170                              
pF1KE6 NLYATEEGPINIGGLQQFATETLILAFSLMNHL                           
       :::::::::::::::::::::..                                     
XP_016 NLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPEKMSEAYSAKIALFGAGPASI
           110       120       130       140       150       160   




173 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:27:29 2016 done: Tue Nov  8 14:27:29 2016
 Total Scan time:  4.010 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]