FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6565, 173 aa
  1>>>pF1KE6565 173 - 173 aa - 173 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2542+/-0.00079; mu= 13.3306+/- 0.048
 mean_var=67.9333+/-13.320, 0's: 0 Z-trim(108.4): 14  B-trim: 42 in 1/48
 Lambda= 0.155608
 statistics sampled from 10215 (10218) to 10215 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.314), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS53346.1 DPYD gene_id:1806|Hs108|chr1           ( 173) 1186 274.6 2.2e-74
CCDS30777.1 DPYD gene_id:1806|Hs108|chr1           (1025) 1115 259.1 5.9e-69


>>CCDS53346.1 DPYD gene_id:1806|Hs108|chr1                (173 aa)
 initn: 1186 init1: 1186 opt: 1186  Z-score: 1449.0  bits: 274.6 E(32554): 2.2e-74
Smith-Waterman score: 1186; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)

               10        20        30        40        50        60
pF1KE6 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
               70        80        90       100       110       120

              130       140       150       160       170   
pF1KE6 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL
              130       140       150       160       170   

>>CCDS30777.1 DPYD gene_id:1806|Hs108|chr1                (1025 aa)
 initn: 1137 init1: 1115 opt: 1115  Z-score: 1351.5  bits: 259.1 E(32554): 5.9e-69
Smith-Waterman score: 1115; 98.8% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KE6 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE6 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL       
       :::::::::::::::::::::::::::::::::::::::::..                 
CCDS30 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPE
              130       140       150       160       170       180

CCDS30 KMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDV
              190       200       210       220       230       240




173 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:27:28 2016 done: Tue Nov  8 14:27:28 2016
 Total Scan time:  1.820 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]