FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6560, 165 aa
  1>>>pF1KE6560 165 - 165 aa - 165 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7937+/-0.000323; mu= 14.6751+/- 0.020
 mean_var=57.9398+/-11.389, 0's: 0 Z-trim(115.4): 5  B-trim: 196 in 2/49
 Lambda= 0.168495
 statistics sampled from 25794 (25798) to 25794 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.302), width:  16
 Scan time:  4.120

The best scores are:                                      opt bits E(85289)
NP_001171273 (OMIM: 607954) ran guanine nucleotide ( 165) 1105 276.4 1.5e-74
NP_001171272 (OMIM: 607954) ran guanine nucleotide ( 146)  795 201.0 6.4e-52
NP_057576 (OMIM: 607954) ran guanine nucleotide re ( 186)  796 201.3 6.6e-52
NP_001317056 (OMIM: 607954) ran guanine nucleotide ( 118)  790 199.7 1.3e-51


>>NP_001171273 (OMIM: 607954) ran guanine nucleotide rel  (165 aa)
 initn: 1105 init1: 1105 opt: 1105  Z-score: 1459.6  bits: 276.4 E(85289): 1.5e-74
Smith-Waterman score: 1105; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA
               70        80        90       100       110       120

              130       140       150       160     
pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD
              130       140       150       160     

>>NP_001171272 (OMIM: 607954) ran guanine nucleotide rel  (146 aa)
 initn: 795 init1: 795 opt: 795  Z-score: 1053.1  bits: 201.0 E(85289): 6.4e-52
Smith-Waterman score: 795; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
NP_001 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVAK
               70        80        90       100       110       120

              130       140       150       160     
pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD
                                                    
NP_001 DVTLHQALLRLPQYQTDLLLTFNQPP                   
              130       140                         

>>NP_057576 (OMIM: 607954) ran guanine nucleotide releas  (186 aa)
 initn: 814 init1: 795 opt: 796  Z-score: 1052.9  bits: 201.3 E(85289): 6.6e-52
Smith-Waterman score: 796; 76.2% identity (85.4% similar) in 164 aa overlap (1-164:1-162)

               10        20        30        40        50        60
pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_057 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQV-A
               70        80        90       100       110          

              130       140       150       160                    
pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD               
       .. ..  ..     . :...:  .        .: :  . .:.:                
NP_057 KDVTLH-QALLRLPQYQTDLLLTFNQPPPDNRSSLGPENLSPAPWSLGDFEQLVTSLTLH
     120        130       140       150       160       170        

NP_057 DPNIFGPQ
      180      

>>NP_001317056 (OMIM: 607954) ran guanine nucleotide rel  (118 aa)
 initn: 790 init1: 790 opt: 790  Z-score: 1047.9  bits: 199.7 E(85289): 1.3e-51
Smith-Waterman score: 790; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
NP_001 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQP  
               70        80        90       100       110          

              130       140       150       160     
pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD




165 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:24:59 2016 done: Tue Nov  8 14:24:59 2016
 Total Scan time:  4.120 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]