FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6560, 165 aa
  1>>>pF1KE6560 165 - 165 aa - 165 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8317+/-0.00071; mu= 14.5615+/- 0.043
 mean_var=58.9779+/-11.638, 0's: 0 Z-trim(108.8): 5  B-trim: 18 in 1/50
 Lambda= 0.167005
 statistics sampled from 10461 (10465) to 10461 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.321), width:  16
 Scan time:  1.780

The best scores are:                                      opt bits E(32554)
CCDS54087.1 RANGRF gene_id:29098|Hs108|chr17       ( 165) 1105 274.0 2.9e-74
CCDS54086.1 RANGRF gene_id:29098|Hs108|chr17       ( 146)  795 199.3 8.1e-52
CCDS11137.1 RANGRF gene_id:29098|Hs108|chr17       ( 186)  796 199.6 8.4e-52
CCDS82066.1 RANGRF gene_id:29098|Hs108|chr17       ( 118)  790 198.0 1.6e-51


>>CCDS54087.1 RANGRF gene_id:29098|Hs108|chr17            (165 aa)
 initn: 1105 init1: 1105 opt: 1105  Z-score: 1446.6  bits: 274.0 E(32554): 2.9e-74
Smith-Waterman score: 1105; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA
               70        80        90       100       110       120

              130       140       150       160     
pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD
              130       140       150       160     

>>CCDS54086.1 RANGRF gene_id:29098|Hs108|chr17            (146 aa)
 initn: 795 init1: 795 opt: 795  Z-score: 1043.7  bits: 199.3 E(32554): 8.1e-52
Smith-Waterman score: 795; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS54 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVAK
               70        80        90       100       110       120

              130       140       150       160     
pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD
                                                    
CCDS54 DVTLHQALLRLPQYQTDLLLTFNQPP                   
              130       140                         

>>CCDS11137.1 RANGRF gene_id:29098|Hs108|chr17            (186 aa)
 initn: 814 init1: 795 opt: 796  Z-score: 1043.5  bits: 199.6 E(32554): 8.4e-52
Smith-Waterman score: 796; 76.2% identity (85.4% similar) in 164 aa overlap (1-164:1-162)

               10        20        30        40        50        60
pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS11 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQV-A
               70        80        90       100       110          

              130       140       150       160                    
pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD               
       .. ..  ..     . :...:  .        .: :  . .:.:                
CCDS11 KDVTLH-QALLRLPQYQTDLLLTFNQPPPDNRSSLGPENLSPAPWSLGDFEQLVTSLTLH
     120        130       140       150       160       170        

CCDS11 DPNIFGPQ
      180      

>>CCDS82066.1 RANGRF gene_id:29098|Hs108|chr17            (118 aa)
 initn: 790 init1: 790 opt: 790  Z-score: 1038.6  bits: 198.0 E(32554): 1.6e-51
Smith-Waterman score: 790; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS82 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQP  
               70        80        90       100       110          

              130       140       150       160     
pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD




165 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:24:58 2016 done: Tue Nov  8 14:24:58 2016
 Total Scan time:  1.780 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]