Result of FASTA (omim) for
pFN21AE6558
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6558, 156 aa
1>>>pF1KE6558 156 - 156 aa - 156 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6555+/-0.000257; mu= 11.9971+/- 0.016
mean_var=76.4350+/-15.274, 0's: 0 Z-trim(121.5): 5 B-trim: 0 in 0/60
Lambda= 0.146699
statistics sampled from 38191 (38196) to 38191 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.448), width: 16
Scan time: 4.600
The best scores are: opt bits E(85289)
NP_001014838 (OMIM: 616953) protein CutA isoform 2 ( 156) 1002 220.0 1.2e-57
NP_057005 (OMIM: 616953) protein CutA isoform 2 pr ( 156) 1002 220.0 1.2e-57
NP_001014837 (OMIM: 616953) protein CutA isoform 2 ( 156) 1002 220.0 1.2e-57
NP_001014840 (OMIM: 616953) protein CutA isoform 3 ( 179) 1002 220.1 1.3e-57
NP_001014433 (OMIM: 616953) protein CutA isoform 1 ( 198) 1002 220.1 1.5e-57
>>NP_001014838 (OMIM: 616953) protein CutA isoform 2 pre (156 aa)
initn: 1002 init1: 1002 opt: 1002 Z-score: 1156.0 bits: 220.0 E(85289): 1.2e-57
Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY
70 80 90 100 110 120
130 140 150
pF1KE6 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
::::::::::::::::::::::::::::::::::::
NP_001 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
130 140 150
>>NP_057005 (OMIM: 616953) protein CutA isoform 2 precur (156 aa)
initn: 1002 init1: 1002 opt: 1002 Z-score: 1156.0 bits: 220.0 E(85289): 1.2e-57
Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY
70 80 90 100 110 120
130 140 150
pF1KE6 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
::::::::::::::::::::::::::::::::::::
NP_057 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
130 140 150
>>NP_001014837 (OMIM: 616953) protein CutA isoform 2 pre (156 aa)
initn: 1002 init1: 1002 opt: 1002 Z-score: 1156.0 bits: 220.0 E(85289): 1.2e-57
Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY
70 80 90 100 110 120
130 140 150
pF1KE6 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
::::::::::::::::::::::::::::::::::::
NP_001 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
130 140 150
>>NP_001014840 (OMIM: 616953) protein CutA isoform 3 pre (179 aa)
initn: 1002 init1: 1002 opt: 1002 Z-score: 1155.1 bits: 220.1 E(85289): 1.3e-57
Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:24-179)
10 20 30
pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSG
:::::::::::::::::::::::::::::::::::::
NP_001 MSGGRAPAVLLGGVASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE6 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE6 MMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
130 140 150 160 170
>>NP_001014433 (OMIM: 616953) protein CutA isoform 1 [Ho (198 aa)
initn: 1002 init1: 1002 opt: 1002 Z-score: 1154.4 bits: 220.1 E(85289): 1.5e-57
Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:43-198)
10 20 30
pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQP
::::::::::::::::::::::::::::::
NP_001 GGPSSTVTWCALFSNHVAATQASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQP
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE6 SPASDSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPASDSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKI
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE6 EEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSD
140 150 160 170 180 190
pF1KE6 SITVLP
::::::
NP_001 SITVLP
156 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:24:05 2016 done: Tue Nov 8 14:24:06 2016
Total Scan time: 4.600 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]