FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6558, 156 aa
  1>>>pF1KE6558 156 - 156 aa - 156 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7021+/-0.000567; mu= 11.6898+/- 0.035
 mean_var=76.3804+/-15.032, 0's: 0 Z-trim(113.9): 5  B-trim: 0 in 0/54
 Lambda= 0.146752
 statistics sampled from 14528 (14531) to 14528 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.446), width:  16
 Scan time:  1.840

The best scores are:                                      opt bits E(32554)
CCDS4779.1 CUTA gene_id:51596|Hs108|chr6           ( 156) 1002 220.1 4.3e-58
CCDS34433.1 CUTA gene_id:51596|Hs108|chr6          ( 179) 1002 220.2 4.8e-58
CCDS34432.1 CUTA gene_id:51596|Hs108|chr6          ( 198) 1002 220.2 5.2e-58


>>CCDS4779.1 CUTA gene_id:51596|Hs108|chr6                (156 aa)
 initn: 1002 init1: 1002 opt: 1002  Z-score: 1156.5  bits: 220.1 E(32554): 4.3e-58
Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)

               10        20        30        40        50        60
pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY
               70        80        90       100       110       120

              130       140       150      
pF1KE6 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
       ::::::::::::::::::::::::::::::::::::
CCDS47 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
              130       140       150      

>>CCDS34433.1 CUTA gene_id:51596|Hs108|chr6               (179 aa)
 initn: 1002 init1: 1002 opt: 1002  Z-score: 1155.6  bits: 220.2 E(32554): 4.8e-58
Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:24-179)

                                      10        20        30       
pF1KE6                        MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSG
                              :::::::::::::::::::::::::::::::::::::
CCDS34 MSGGRAPAVLLGGVASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSG
               10        20        30        40        50        60

        40        50        60        70        80        90       
pF1KE6 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVL
               70        80        90       100       110       120

       100       110       120       130       140       150      
pF1KE6 MMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
              130       140       150       160       170         

>>CCDS34432.1 CUTA gene_id:51596|Hs108|chr6               (198 aa)
 initn: 1002 init1: 1002 opt: 1002  Z-score: 1154.9  bits: 220.2 E(32554): 5.2e-58
Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:43-198)

                                             10        20        30
pF1KE6                               MPALLPVASRLLLLPRVLLTMASGSPPTQP
                                     ::::::::::::::::::::::::::::::
CCDS34 GGPSSTVTWCALFSNHVAATQASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQP
             20        30        40        50        60        70  

               40        50        60        70        80        90
pF1KE6 SPASDSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SPASDSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKI
             80        90       100       110       120       130  

              100       110       120       130       140       150
pF1KE6 EEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSD
            140       150       160       170       180       190  

             
pF1KE6 SITVLP
       ::::::
CCDS34 SITVLP
             




156 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:24:04 2016 done: Tue Nov  8 14:24:04 2016
 Total Scan time:  1.840 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]