FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6557, 153 aa
  1>>>pF1KE6557 153 - 153 aa - 153 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5026+/-0.000312; mu= 10.5629+/- 0.019
 mean_var=59.8363+/-11.842, 0's: 0 Z-trim(115.0): 7  B-trim: 38 in 1/55
 Lambda= 0.165803
 statistics sampled from 25221 (25228) to 25221 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.296), width:  16
 Scan time:  5.230

The best scores are:                                      opt bits E(85289)
NP_758958 (OMIM: 181500,607408) D-amino acid oxida ( 153) 1025 253.1 1.3e-67
XP_005254099 (OMIM: 181500,607408) PREDICTED: D-am ( 126)  627 157.9 4.8e-39
NP_001155286 (OMIM: 181500,607408) D-amino acid ox (  82)  572 144.7 2.9e-35
NP_001155284 (OMIM: 181500,607408) D-amino acid ox ( 125)  415 107.2 8.7e-24


>>NP_758958 (OMIM: 181500,607408) D-amino acid oxidase a  (153 aa)
 initn: 1025 init1: 1025 opt: 1025  Z-score: 1335.1  bits: 253.1 E(85289): 1.3e-67
Smith-Waterman score: 1025; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE6 MLEKLMGADSLQLFRSRYTLGKIYFIGFQRSILLSKSENSLNSIAKETEEGRETVTRKEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 MLEKLMGADSLQLFRSRYTLGKIYFIGFQRSILLSKSENSLNSIAKETEEGRETVTRKEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 WKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSHVGKVFMARNYEFLAYEASK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 WKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSHVGKVFMARNYEFLAYEASK
               70        80        90       100       110       120

              130       140       150   
pF1KE6 DRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE
       :::::::::::::::::::::::::::::::::
NP_758 DRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE
              130       140       150   

>>XP_005254099 (OMIM: 181500,607408) PREDICTED: D-amino   (126 aa)
 initn: 627 init1: 627 opt: 627  Z-score: 822.0  bits: 157.9 E(85289): 4.8e-39
Smith-Waterman score: 627; 96.9% identity (98.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KE6 MLEKLMGADSLQLFRSRYTLGKIYFIGFQRSILLSKSENSLNSIAKETEEGRETVTRKEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLEKLMGADSLQLFRSRYTLGKIYFIGFQRSILLSKSENSLNSIAKETEEGRETVTRKEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 WKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSHVGKVFMARNYEFLAYEASK
       ::::::::::::::::::::::::::::::::::  .:                      
XP_005 WKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAEHSKVILNGNLHCHFKRISQIFAGHFM
               70        80        90       100       110       120

              130       140       150   
pF1KE6 DRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE
                                        
XP_005 EGDTEA                           
                                        

>>NP_001155286 (OMIM: 181500,607408) D-amino acid oxidas  (82 aa)
 initn: 572 init1: 572 opt: 572  Z-score: 754.0  bits: 144.7 E(85289): 2.9e-35
Smith-Waterman score: 572; 100.0% identity (100.0% similar) in 82 aa overlap (72-153:1-82)

              50        60        70        80        90       100 
pF1KE6 NSIAKETEEGRETVTRKEGWKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSH
                                     ::::::::::::::::::::::::::::::
NP_001                               MAQRHLQRSLCPWVSYLPQPYAELEEVSSH
                                             10        20        30

             110       120       130       140       150   
pF1KE6 VGKVFMARNYEFLAYEASKDRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGKVFMARNYEFLAYEASKDRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE
               40        50        60        70        80  

>>NP_001155284 (OMIM: 181500,607408) D-amino acid oxidas  (125 aa)
 initn: 400 init1: 400 opt: 415  Z-score: 548.0  bits: 107.2 E(85289): 8.7e-24
Smith-Waterman score: 415; 88.6% identity (92.9% similar) in 70 aa overlap (84-153:57-125)

            60        70        80        90       100       110   
pF1KE6 TVTRKEGWKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSHVGKVFMARNYEF
                                     : .   .:: .:::::::::::::::::::
NP_001 PMQRAGTSNQWNMGKVMTLDSGDEVTFHKTWPTETGSPY-RLEEVSSHVGKVFMARNYEF
         30        40        50        60         70        80     

           120       130       140       150   
pF1KE6 LAYEASKDRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE
       ::::::::::::::::::::::::::::::::::::::::
NP_001 LAYEASKDRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE
          90       100       110       120     




153 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:23:36 2016 done: Tue Nov  8 14:23:37 2016
 Total Scan time:  5.230 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]