FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6553, 147 aa
  1>>>pF1KE6553 147 - 147 aa - 147 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0657+/-0.000612; mu= 13.6296+/- 0.037
 mean_var=69.9294+/-13.461, 0's: 0 Z-trim(112.1): 35  B-trim: 0 in 0/52
 Lambda= 0.153371
 statistics sampled from 12904 (12938) to 12904 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.397), width:  16
 Scan time:  1.130

The best scores are:                                      opt bits E(32554)
CCDS4706.1 AIF1 gene_id:199|Hs108|chr6             ( 147)  955 219.3 6.9e-58
CCDS6939.1 AIF1L gene_id:83543|Hs108|chr9          ( 150)  632 147.8 2.3e-36
CCDS34398.1 AIF1 gene_id:199|Hs108|chr6            (  93)  599 140.3 2.5e-34
CCDS55348.1 AIF1L gene_id:83543|Hs108|chr9         ( 176)  517 122.4 1.2e-28
CCDS55349.1 AIF1L gene_id:83543|Hs108|chr9         ( 102)  449 107.2 2.6e-24


>>CCDS4706.1 AIF1 gene_id:199|Hs108|chr6                  (147 aa)
 initn: 955 init1: 955 opt: 955  Z-score: 1152.7  bits: 219.3 E(32554): 6.9e-58
Smith-Waterman score: 955; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KE6 MSQTRDLQGGKAFGLLKAQQEERLDEINKQFLDDPKYSSDEDLPSKLEGFKEKYMEFDLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSQTRDLQGGKAFGLLKAQQEERLDEINKQFLDDPKYSSDEDLPSKLEGFKEKYMEFDLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKRSAILKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKRSAILKM
               70        80        90       100       110       120

              130       140       
pF1KE6 ILMYEEKAREKEKPTGPPAKKAISELP
       :::::::::::::::::::::::::::
CCDS47 ILMYEEKAREKEKPTGPPAKKAISELP
              130       140       

>>CCDS6939.1 AIF1L gene_id:83543|Hs108|chr9               (150 aa)
 initn: 630 init1: 579 opt: 632  Z-score: 766.3  bits: 147.8 E(32554): 2.3e-36
Smith-Waterman score: 632; 66.2% identity (89.4% similar) in 142 aa overlap (7-147:9-150)

                 10        20        30        40        50        
pF1KE6   MSQTRDLQGGKAFGLLKAQQEERLDEINKQFLDDPKYSSDEDLPSKLEGFKEKYMEFD
               .:::::::::::.::.:: :::..:: : :::..:.:: :: .:::::::::
CCDS69 MSGELSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFD
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE6 LNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKRSAIL
       ::..:.::.::::::.:::::::::::.::.:.::..: ..:.:: ::. ::::::::.:
CCDS69 LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSAVL
               70        80        90       100       110       120

      120       130        140       
pF1KE6 KMILMYEEKAREKE-KPTGPPAKKAISELP
       :...:.: :: :.  ::.::: .. :. ::
CCDS69 KLVMMFEGKANESSPKPVGPPPERDIASLP
              130       140       150

>>CCDS34398.1 AIF1 gene_id:199|Hs108|chr6                 (93 aa)
 initn: 599 init1: 599 opt: 599  Z-score: 729.7  bits: 140.3 E(32554): 2.5e-34
Smith-Waterman score: 599; 100.0% identity (100.0% similar) in 93 aa overlap (55-147:1-93)

           30        40        50        60        70        80    
pF1KE6 DEINKQFLDDPKYSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHL
                                     ::::::::::::::::::::::::::::::
CCDS34                               MEFDLNGNGDIDIMSLKRMLEKLGVPKTHL
                                             10        20        30

           90       100       110       120       130       140    
pF1KE6 ELKKLIGEVSSGSGETFSYPDFLRMMLGKRSAILKMILMYEEKAREKEKPTGPPAKKAIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ELKKLIGEVSSGSGETFSYPDFLRMMLGKRSAILKMILMYEEKAREKEKPTGPPAKKAIS
               40        50        60        70        80        90

          
pF1KE6 ELP
       :::
CCDS34 ELP
          

>>CCDS55348.1 AIF1L gene_id:83543|Hs108|chr9              (176 aa)
 initn: 615 init1: 461 opt: 517  Z-score: 627.8  bits: 122.4 E(32554): 1.2e-28
Smith-Waterman score: 570; 56.0% identity (75.6% similar) in 168 aa overlap (7-147:9-176)

                 10        20                                  30  
pF1KE6   MSQTRDLQGGKAFGLLKAQQEERLDEINK--------------------------QFL
               .:::::::::::.::.:: :::.                          .::
CCDS55 MSGELSNRFQGGKAFGLLKARQERRLAEINRYCAGREPQLQRISCSQHSCLLALLFQEFL
               10        20        30        40        50        60

             40        50        60        70        80        90  
pF1KE6 DDPKYSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGE
        : :::..:.:: :: .:::::::::::..:.::.::::::.:::::::::::.::.:.:
CCDS55 CDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISE
               70        80        90       100       110       120

            100       110       120       130        140       
pF1KE6 VSSGSGETFSYPDFLRMMLGKRSAILKMILMYEEKAREKE-KPTGPPAKKAISELP
       :..: ..:.:: ::. ::::::::.::...:.: :: :.  ::.::: .. :. ::
CCDS55 VTGGVSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIASLP
              130       140       150       160       170      

>>CCDS55349.1 AIF1L gene_id:83543|Hs108|chr9              (102 aa)
 initn: 449 init1: 449 opt: 449  Z-score: 549.8  bits: 107.2 E(32554): 2.6e-24
Smith-Waterman score: 449; 73.6% identity (94.5% similar) in 91 aa overlap (7-97:9-99)

                 10        20        30        40        50        
pF1KE6   MSQTRDLQGGKAFGLLKAQQEERLDEINKQFLDDPKYSSDEDLPSKLEGFKEKYMEFD
               .:::::::::::.::.:: :::..:: : :::..:.:: :: .:::::::::
CCDS55 MSGELSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFD
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE6 LNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKRSAIL
       ::..:.::.::::::.:::::::::::.::.:.::..::                     
CCDS55 LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGSHDV                  
               70        80        90       100                    

      120       130       140       
pF1KE6 KMILMYEEKAREKEKPTGPPAKKAISELP




147 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:21:34 2016 done: Tue Nov  8 14:21:34 2016
 Total Scan time:  1.130 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]