FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6552, 128 aa
  1>>>pF1KE6552 128 - 128 aa - 128 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1151+/-0.000251; mu= 13.0088+/- 0.016
 mean_var=65.9373+/-13.558, 0's: 0 Z-trim(121.9): 3  B-trim: 434 in 1/51
 Lambda= 0.157946
 statistics sampled from 39168 (39171) to 39168 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.459), width:  16
 Scan time:  4.370

The best scores are:                                      opt bits E(85289)
NP_002484 (OMIM: 603322) NADH dehydrogenase [ubiqu ( 128)  908 214.2 4.5e-56
NP_877416 (OMIM: 603322) NADH dehydrogenase [ubiqu ( 113)  649 155.2 2.4e-38
NP_001186916 (OMIM: 603322) NADH dehydrogenase [ub (  97)  442 108.0 3.3e-24


>>NP_002484 (OMIM: 603322) NADH dehydrogenase [ubiquinon  (128 aa)
 initn: 908 init1: 908 opt: 908  Z-score: 1127.7  bits: 214.2 E(85289): 4.5e-56
Smith-Waterman score: 908; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KE6 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM
               70        80        90       100       110       120

               
pF1KE6 KEFPDQHH
       ::::::::
NP_002 KEFPDQHH
               

>>NP_877416 (OMIM: 603322) NADH dehydrogenase [ubiquinon  (113 aa)
 initn: 793 init1: 649 opt: 649  Z-score: 809.5  bits: 155.2 E(85289): 2.4e-38
Smith-Waterman score: 767; 88.3% identity (88.3% similar) in 128 aa overlap (1-128:1-113)

               10        20        30        40        50        60
pF1KE6 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_877 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM
       :::::::::::::::::::::::::::::::               ::::::::::::::
NP_877 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVS---------------GDTILETGEVIPPM
               70        80        90                      100     

               
pF1KE6 KEFPDQHH
       ::::::::
NP_877 KEFPDQHH
         110   

>>NP_001186916 (OMIM: 603322) NADH dehydrogenase [ubiqui  (97 aa)
 initn: 678 init1: 433 opt: 442  Z-score: 555.6  bits: 108.0 E(85289): 3.3e-24
Smith-Waterman score: 620; 75.8% identity (75.8% similar) in 128 aa overlap (1-128:1-97)

               10        20        30        40        50        60
pF1KE6 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM
                                      :::::::::::::::::::::::::::::
NP_001 -------------------------------EKPYGIVEKKSRIFPGDTILETGEVIPPM
                                              70        80         

               
pF1KE6 KEFPDQHH
       ::::::::
NP_001 KEFPDQHH
      90       




128 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:21:07 2016 done: Tue Nov  8 14:21:08 2016
 Total Scan time:  4.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]