FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6552, 128 aa
  1>>>pF1KE6552 128 - 128 aa - 128 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3277+/-0.000513; mu= 11.5163+/- 0.031
 mean_var=61.6495+/-12.468, 0's: 0 Z-trim(114.7): 6  B-trim: 250 in 1/50
 Lambda= 0.163346
 statistics sampled from 15291 (15294) to 15291 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.47), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS6528.1 NDUFB6 gene_id:4712|Hs108|chr9          ( 128)  908 221.1 1.5e-58
CCDS6529.1 NDUFB6 gene_id:4712|Hs108|chr9          ( 113)  649 160.0 3.1e-40
CCDS75826.1 NDUFB6 gene_id:4712|Hs108|chr9         (  97)  442 111.2 1.3e-25


>>CCDS6528.1 NDUFB6 gene_id:4712|Hs108|chr9               (128 aa)
 initn: 908 init1: 908 opt: 908  Z-score: 1164.7  bits: 221.1 E(32554): 1.5e-58
Smith-Waterman score: 908; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KE6 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM
               70        80        90       100       110       120

               
pF1KE6 KEFPDQHH
       ::::::::
CCDS65 KEFPDQHH
               

>>CCDS6529.1 NDUFB6 gene_id:4712|Hs108|chr9               (113 aa)
 initn: 793 init1: 649 opt: 649  Z-score: 835.7  bits: 160.0 E(32554): 3.1e-40
Smith-Waterman score: 767; 88.3% identity (88.3% similar) in 128 aa overlap (1-128:1-113)

               10        20        30        40        50        60
pF1KE6 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM
       :::::::::::::::::::::::::::::::               ::::::::::::::
CCDS65 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVS---------------GDTILETGEVIPPM
               70        80        90                      100     

               
pF1KE6 KEFPDQHH
       ::::::::
CCDS65 KEFPDQHH
         110   

>>CCDS75826.1 NDUFB6 gene_id:4712|Hs108|chr9              (97 aa)
 initn: 678 init1: 433 opt: 442  Z-score: 573.1  bits: 111.2 E(32554): 1.3e-25
Smith-Waterman score: 620; 75.8% identity (75.8% similar) in 128 aa overlap (1-128:1-97)

               10        20        30        40        50        60
pF1KE6 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM
                                      :::::::::::::::::::::::::::::
CCDS75 -------------------------------EKPYGIVEKKSRIFPGDTILETGEVIPPM
                                              70        80         

               
pF1KE6 KEFPDQHH
       ::::::::
CCDS75 KEFPDQHH
      90       




128 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:21:07 2016 done: Tue Nov  8 14:21:07 2016
 Total Scan time:  1.480 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]