FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6551, 132 aa
  1>>>pF1KE6551 132 - 132 aa - 132 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9814+/-0.000583; mu= 15.1252+/- 0.036
 mean_var=94.1408+/-17.962, 0's: 0 Z-trim(115.6): 15  B-trim: 53 in 1/50
 Lambda= 0.132186
 statistics sampled from 16120 (16133) to 16120 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.496), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS13232.1 ASIP gene_id:434|Hs108|chr20           ( 132)  896 179.3 6.1e-46


>>CCDS13232.1 ASIP gene_id:434|Hs108|chr20                (132 aa)
 initn: 896 init1: 896 opt: 896  Z-score: 938.3  bits: 179.3 E(32554): 6.1e-46
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)

               10        20        30        40        50        60
pF1KE6 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR
               70        80        90       100       110       120

              130  
pF1KE6 SACSCRVLSLNC
       ::::::::::::
CCDS13 SACSCRVLSLNC
              130  




132 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:20:33 2016 done: Tue Nov  8 14:20:33 2016
 Total Scan time:  1.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]