FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6550, 122 aa
  1>>>pF1KE6550 122 - 122 aa - 122 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4602+/-0.000307; mu= 14.8679+/- 0.019
 mean_var=55.2659+/-11.394, 0's: 0 Z-trim(117.2): 17  B-trim: 750 in 1/53
 Lambda= 0.172522
 statistics sampled from 28949 (28966) to 28949 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.34), width:  16
 Scan time:  3.510

The best scores are:                                      opt bits E(85289)
NP_061846 (OMIM: 605951,612937) dolichol-phosphate ( 122)  800 206.3 9.8e-54
XP_016856987 (OMIM: 605951,612937) PREDICTED: doli (  92)  622 161.9 1.7e-40
NP_714963 (OMIM: 605951,612937) dolichol-phosphate (  92)  622 161.9 1.7e-40


>>NP_061846 (OMIM: 605951,612937) dolichol-phosphate man  (122 aa)
 initn: 800 init1: 800 opt: 800  Z-score: 1085.7  bits: 206.3 E(85289): 9.8e-54
Smith-Waterman score: 800; 100.0% identity (100.0% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KE6 MLSVGGLRLSLVRFSFLLLRGALLPSLAVTMTKLAQWLWGLAILGSTWVALTTGALGLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MLSVGGLRLSLVRFSFLLLRGALLPSLAVTMTKLAQWLWGLAILGSTWVALTTGALGLEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PLSCQEVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PLSCQEVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL
               70        80        90       100       110       120

         
pF1KE6 RF
       ::
NP_061 RF
         

>>XP_016856987 (OMIM: 605951,612937) PREDICTED: dolichol  (92 aa)
 initn: 622 init1: 622 opt: 622  Z-score: 848.0  bits: 161.9 E(85289): 1.7e-40
Smith-Waterman score: 622; 100.0% identity (100.0% similar) in 92 aa overlap (31-122:1-92)

               10        20        30        40        50        60
pF1KE6 MLSVGGLRLSLVRFSFLLLRGALLPSLAVTMTKLAQWLWGLAILGSTWVALTTGALGLEL
                                     ::::::::::::::::::::::::::::::
XP_016                               MTKLAQWLWGLAILGSTWVALTTGALGLEL
                                             10        20        30

               70        80        90       100       110       120
pF1KE6 PLSCQEVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLSCQEVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL
               40        50        60        70        80        90

         
pF1KE6 RF
       ::
XP_016 RF
         

>>NP_714963 (OMIM: 605951,612937) dolichol-phosphate man  (92 aa)
 initn: 622 init1: 622 opt: 622  Z-score: 848.0  bits: 161.9 E(85289): 1.7e-40
Smith-Waterman score: 622; 100.0% identity (100.0% similar) in 92 aa overlap (31-122:1-92)

               10        20        30        40        50        60
pF1KE6 MLSVGGLRLSLVRFSFLLLRGALLPSLAVTMTKLAQWLWGLAILGSTWVALTTGALGLEL
                                     ::::::::::::::::::::::::::::::
NP_714                               MTKLAQWLWGLAILGSTWVALTTGALGLEL
                                             10        20        30

               70        80        90       100       110       120
pF1KE6 PLSCQEVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_714 PLSCQEVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL
               40        50        60        70        80        90

         
pF1KE6 RF
       ::
NP_714 RF
         




122 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:19:55 2016 done: Tue Nov  8 14:19:55 2016
 Total Scan time:  3.510 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]