FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6549, 116 aa
  1>>>pF1KE6549 116 - 116 aa - 116 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9334+/-0.000323; mu= 11.7641+/- 0.020
 mean_var=55.1930+/-10.896, 0's: 0 Z-trim(116.2): 44  B-trim: 673 in 2/53
 Lambda= 0.172636
 statistics sampled from 27191 (27236) to 27191 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.319), width:  16
 Scan time:  4.500

The best scores are:                                      opt bits E(85289)
NP_660304 (OMIM: 608977,610198) mitochondrial impo ( 116)  749 194.0 4.7e-50
NP_001177162 (OMIM: 608977,610198) mitochondrial i (  91)  603 157.6 3.3e-39
NP_037370 (OMIM: 615339) dnaJ homolog subfamily C  ( 150)  452 120.1 1.1e-27


>>NP_660304 (OMIM: 608977,610198) mitochondrial import i  (116 aa)
 initn: 749 init1: 749 opt: 749  Z-score: 1019.7  bits: 194.0 E(85289): 4.7e-50
Smith-Waterman score: 749; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KE6 MASTVVAVGLTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 MASTVVAVGLTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTK
               10        20        30        40        50        60

               70        80        90       100       110      
pF1KE6 REAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 REAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK
               70        80        90       100       110      

>>NP_001177162 (OMIM: 608977,610198) mitochondrial impor  (91 aa)
 initn: 603 init1: 603 opt: 603  Z-score: 824.8  bits: 157.6 E(85289): 3.3e-39
Smith-Waterman score: 603; 100.0% identity (100.0% similar) in 91 aa overlap (26-116:1-91)

               10        20        30        40        50        60
pF1KE6 MASTVVAVGLTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTK
                                :::::::::::::::::::::::::::::::::::
NP_001                          MKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTK
                                        10        20        30     

               70        80        90       100       110      
pF1KE6 REAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK
          40        50        60        70        80        90 

>>NP_037370 (OMIM: 615339) dnaJ homolog subfamily C memb  (150 aa)
 initn: 458 init1: 360 opt: 452  Z-score: 618.2  bits: 120.1 E(85289): 1.1e-27
Smith-Waterman score: 452; 58.3% identity (84.3% similar) in 115 aa overlap (1-115:36-149)

                                             10        20        30
pF1KE6                               MASTVVAVGLTIAAAGFAGRYVLQAMKHME
                                     .. ...:::: .:: .:::::...  : .:
NP_037 VIAPVGESLRYAEYLQPSAKRPDADVDQQRLVRSLIAVGLGVAALAFAGRYAFRIWKPLE
          10        20        30        40        50        60     

               40        50        60        70        80        90
pF1KE6 PQVKQVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNH
         . .. ...   .::. ::.:::: ::..:::.:::::::.:.:.::: ::::.:.:::
NP_037 QVITETAKKISTPSFSS-YYKGGFEQKMSRREAGLILGVSPSAGKAKIRTAHRRVMILNH
          70        80         90       100       110       120    

              100       110      
pF1KE6 PDKGGSPYIAAKINEAKDLLEGQAKK
       ::::::::.::::::::::::  .: 
NP_037 PDKGGSPYVAAKINEAKDLLETTTKH
          130       140       150




116 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:19:14 2016 done: Tue Nov  8 14:19:14 2016
 Total Scan time:  4.500 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]