FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6548, 108 aa
  1>>>pF1KE6548 108 - 108 aa - 108 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3350+/-0.000232; mu= 7.2252+/- 0.015
 mean_var=100.4622+/-20.229, 0's: 0 Z-trim(124.7): 10  B-trim: 2467 in 1/58
 Lambda= 0.127960
 statistics sampled from 46756 (46774) to 46756 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.85), E-opt: 0.2 (0.548), width:  16
 Scan time:  4.930

The best scores are:                                      opt bits E(85289)
NP_001001503 (OMIM: 602184) NADH dehydrogenase [ub ( 108)  723 141.9   2e-34
XP_016883848 (OMIM: 602184) PREDICTED: NADH dehydr ( 129)  370 76.8 9.3e-15
XP_011527888 (OMIM: 602184) PREDICTED: NADH dehydr ( 494)  370 77.1 2.8e-14
NP_066553 (OMIM: 602184) NADH dehydrogenase [ubiqu ( 473)  367 76.6 3.9e-14


>>NP_001001503 (OMIM: 602184) NADH dehydrogenase [ubiqui  (108 aa)
 initn: 723 init1: 723 opt: 723  Z-score: 739.2  bits: 141.9 E(85289): 2e-34
Smith-Waterman score: 723; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)

               10        20        30        40        50        60
pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP
               10        20        30        40        50        60

               70        80        90       100        
pF1KE6 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH
               70        80        90       100        

>>XP_016883848 (OMIM: 602184) PREDICTED: NADH dehydrogen  (129 aa)
 initn: 709 init1: 364 opt: 370  Z-score: 385.9  bits: 76.8 E(85289): 9.3e-15
Smith-Waterman score: 671; 83.7% identity (83.7% similar) in 129 aa overlap (1-108:1-129)

               10        20        30        40        50          
pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPK----
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
XP_016 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKSVPT
               10        20        30        40        50        60

                          60        70        80        90         
pF1KE6 -----------------KPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQP
                        :::::::::::::::::::::::::::::::::::::::::::
XP_016 PHRRYSPCGDWKDASSLKPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQP
               70        80        90       100       110       120

     100        
pF1KE6 SSGRESPRH
       :::::::::
XP_016 SSGRESPRH
                

>>XP_011527888 (OMIM: 602184) PREDICTED: NADH dehydrogen  (494 aa)
 initn: 709 init1: 364 opt: 370  Z-score: 377.4  bits: 77.1 E(85289): 2.8e-14
Smith-Waterman score: 370; 85.7% identity (92.1% similar) in 63 aa overlap (46-108:432-494)

          20        30        40        50        60        70     
pF1KE6 KTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAPVPAEPFDNTTYKNLQ
                                     : .. :..   :::::::::::::::::::
XP_011 AEGEAMEDAAAPGDDRGGTQGVPTPHRRYSPCGDWKDASSLKPAPVPAEPFDNTTYKNLQ
             410       420       430       440       450       460 

          80        90       100        
pF1KE6 HHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH
       :::::::::::::::::::::::::::::::::
XP_011 HHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH
             470       480       490    

>--
 initn: 389 init1: 359 opt: 359  Z-score: 366.4  bits: 75.1 E(85289): 1.1e-13
Smith-Waterman score: 359; 100.0% identity (100.0% similar) in 56 aa overlap (1-56:1-56)

               10        20        30        40        50        60
pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
XP_011 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKNVVE
               10        20        30        40        50        60

               70        80        90       100                    
pF1KE6 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH            
                                                                   
XP_011 PKERGKLLATQTAAELSKNLSSPSSYPPAVNKGRKVASPSPSGSVLFTDEGVPKFLSRKT
               70        80        90       100       110       120

>>NP_066553 (OMIM: 602184) NADH dehydrogenase [ubiquinon  (473 aa)
 initn: 389 init1: 361 opt: 367  Z-score: 374.7  bits: 76.6 E(85289): 3.9e-14
Smith-Waterman score: 367; 66.7% identity (83.3% similar) in 84 aa overlap (25-108:391-473)

                     10        20        30        40        50    
pF1KE6       MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSP
                                     :.  .....: :: :.. .     .  .. 
NP_066 EGHLKGGQAIVEDQIPPSNLETVPVENNHGFHEKTAALKLEAE-GEAMEDAAAPGDDRGG
              370       380       390       400        410         

           60        70        80        90       100        
pF1KE6 PKKPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH
        ..:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 TQEPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH
     420       430       440       450       460       470   

>--
 initn: 389 init1: 359 opt: 359  Z-score: 366.7  bits: 75.1 E(85289): 1.1e-13
Smith-Waterman score: 359; 100.0% identity (100.0% similar) in 56 aa overlap (1-56:1-56)

               10        20        30        40        50        60
pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
NP_066 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKNVVE
               10        20        30        40        50        60

               70        80        90       100                    
pF1KE6 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH            
                                                                   
NP_066 PKERGKLLATQTAAELSKNLSSPSSYPPAVNKGRKVASPSPSGSVLFTDEGVPKFLSRKT
               70        80        90       100       110       120




108 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:18:35 2016 done: Tue Nov  8 14:18:36 2016
 Total Scan time:  4.930 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]