FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6548, 108 aa
  1>>>pF1KE6548 108 - 108 aa - 108 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0702+/-0.000556; mu= 8.8811+/- 0.034
 mean_var=98.4476+/-19.605, 0's: 0 Z-trim(116.8): 6  B-trim: 816 in 2/53
 Lambda= 0.129262
 statistics sampled from 17435 (17441) to 17435 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.846), E-opt: 0.2 (0.536), width:  16
 Scan time:  1.490

The best scores are:                                      opt bits E(32554)
CCDS33573.1 NDUFV3 gene_id:4731|Hs108|chr21        ( 108)  723 143.1 3.1e-35
CCDS33572.1 NDUFV3 gene_id:4731|Hs108|chr21        ( 473)  367 77.2 9.7e-15


>>CCDS33573.1 NDUFV3 gene_id:4731|Hs108|chr21             (108 aa)
 initn: 723 init1: 723 opt: 723  Z-score: 745.9  bits: 143.1 E(32554): 3.1e-35
Smith-Waterman score: 723; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)

               10        20        30        40        50        60
pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP
               10        20        30        40        50        60

               70        80        90       100        
pF1KE6 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH
               70        80        90       100        

>>CCDS33572.1 NDUFV3 gene_id:4731|Hs108|chr21             (473 aa)
 initn: 389 init1: 361 opt: 367  Z-score: 378.1  bits: 77.2 E(32554): 9.7e-15
Smith-Waterman score: 367; 66.7% identity (83.3% similar) in 84 aa overlap (25-108:391-473)

                     10        20        30        40        50    
pF1KE6       MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSP
                                     :.  .....: :: :.. .     .  .. 
CCDS33 EGHLKGGQAIVEDQIPPSNLETVPVENNHGFHEKTAALKLEAE-GEAMEDAAAPGDDRGG
              370       380       390       400        410         

           60        70        80        90       100        
pF1KE6 PKKPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH
        ..:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TQEPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH
     420       430       440       450       460       470   

>--
 initn: 389 init1: 359 opt: 359  Z-score: 370.1  bits: 75.7 E(32554): 2.7e-14
Smith-Waterman score: 359; 100.0% identity (100.0% similar) in 56 aa overlap (1-56:1-56)

               10        20        30        40        50        60
pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
CCDS33 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKNVVE
               10        20        30        40        50        60

               70        80        90       100                    
pF1KE6 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH            
                                                                   
CCDS33 PKERGKLLATQTAAELSKNLSSPSSYPPAVNKGRKVASPSPSGSVLFTDEGVPKFLSRKT
               70        80        90       100       110       120




108 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:18:34 2016 done: Tue Nov  8 14:18:35 2016
 Total Scan time:  1.490 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]