FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6546, 106 aa
  1>>>pF1KE6546 106 - 106 aa - 106 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8266+/-0.000274; mu= 13.0532+/- 0.017
 mean_var=65.0224+/-13.338, 0's: 0 Z-trim(120.9): 4  B-trim: 1120 in 1/53
 Lambda= 0.159053
 statistics sampled from 36787 (36791) to 36787 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.431), width:  16
 Scan time:  3.600

The best scores are:                                      opt bits E(85289)
NP_004543 (OMIM: 603847) NADH dehydrogenase [ubiqu ( 106)  762 182.2 1.4e-46
NP_001171908 (OMIM: 603847) NADH dehydrogenase [ub ( 106)  762 182.2 1.4e-46


>>NP_004543 (OMIM: 603847) NADH dehydrogenase [ubiquinon  (106 aa)
 initn: 762 init1: 762 opt: 762  Z-score: 957.4  bits: 182.2 E(85289): 1.4e-46
Smith-Waterman score: 762; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KE6 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY
               10        20        30        40        50        60

               70        80        90       100      
pF1KE6 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP
               70        80        90       100      

>>NP_001171908 (OMIM: 603847) NADH dehydrogenase [ubiqui  (106 aa)
 initn: 762 init1: 762 opt: 762  Z-score: 957.4  bits: 182.2 E(85289): 1.4e-46
Smith-Waterman score: 762; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KE6 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY
               10        20        30        40        50        60

               70        80        90       100      
pF1KE6 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP
               70        80        90       100      




106 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:17:31 2016 done: Tue Nov  8 14:17:32 2016
 Total Scan time:  3.600 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]