FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6537, 78 aa
  1>>>pF1KE6537 78 - 78 aa - 78 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4479+/-0.000241; mu= 4.9440+/- 0.015
 mean_var=149.2355+/-29.411, 0's: 0 Z-trim(126.4): 2  B-trim: 33 in 1/55
 Lambda= 0.104988
 statistics sampled from 52420 (52423) to 52420 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.895), E-opt: 0.2 (0.615), width:  16
 Scan time:  3.260

The best scores are:                                      opt bits E(85289)
NP_001119653 (OMIM: 602350) neurogranin [Homo sapi (  78)  560 93.9 2.8e-20
NP_006167 (OMIM: 602350) neurogranin [Homo sapiens (  78)  560 93.9 2.8e-20


>>NP_001119653 (OMIM: 602350) neurogranin [Homo sapiens]  (78 aa)
 initn: 560 init1: 560 opt: 560  Z-score: 485.2  bits: 93.9 E(85289): 2.8e-20
Smith-Waterman score: 560; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)

               10        20        30        40        50        60
pF1KE6 MDCCTENACSKPDDDILDIPLDDPGANAAAAKIQASFRGHMARKKIKSGERGRKGPGPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDCCTENACSKPDDDILDIPLDDPGANAAAAKIQASFRGHMARKKIKSGERGRKGPGPGG
               10        20        30        40        50        60

               70        
pF1KE6 PGGAGVARGGAGGGPSGD
       ::::::::::::::::::
NP_001 PGGAGVARGGAGGGPSGD
               70        

>>NP_006167 (OMIM: 602350) neurogranin [Homo sapiens]     (78 aa)
 initn: 560 init1: 560 opt: 560  Z-score: 485.2  bits: 93.9 E(85289): 2.8e-20
Smith-Waterman score: 560; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)

               10        20        30        40        50        60
pF1KE6 MDCCTENACSKPDDDILDIPLDDPGANAAAAKIQASFRGHMARKKIKSGERGRKGPGPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MDCCTENACSKPDDDILDIPLDDPGANAAAAKIQASFRGHMARKKIKSGERGRKGPGPGG
               10        20        30        40        50        60

               70        
pF1KE6 PGGAGVARGGAGGGPSGD
       ::::::::::::::::::
NP_006 PGGAGVARGGAGGGPSGD
               70        




78 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:13:00 2016 done: Tue Nov  8 14:13:00 2016
 Total Scan time:  3.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]