FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6536, 71 aa
  1>>>pF1KE6536 71 - 71 aa - 71 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.2542+/-0.000322; mu= 11.7563+/- 0.020
 mean_var=42.8003+/- 9.060, 0's: 0 Z-trim(115.2): 5  B-trim: 1323 in 2/49
 Lambda= 0.196043
 statistics sampled from 25570 (25574) to 25570 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.3), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(85289)
XP_006719656 (OMIM: 252500,252600,607840) PREDICTE (1179)  460 137.2 3.6e-32
NP_077288 (OMIM: 252500,252600,607840) N-acetylglu (1256)  460 137.2 3.8e-32
XP_011537033 (OMIM: 252500,252600,607840) PREDICTE (1229)  200 63.7 5.1e-10


>>XP_006719656 (OMIM: 252500,252600,607840) PREDICTED: N  (1179 aa)
 initn: 460 init1: 460 opt: 460  Z-score: 698.6  bits: 137.2 E(85289): 3.6e-32
Smith-Waterman score: 460; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KE6 MLFKLLQRQTYTCLSHRYGLYVCFLGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLFKLLQRQTYTCLSHRYGLYVCFLGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNI
               10        20        30        40        50        60

               70                                                  
pF1KE6 AGKSFQNRSVR                                                 
       ::::::::                                                    
XP_006 AGKSFQNRLCLPMPIDVVYTWVNGTDLELLKELQQVREQMEEEQKAMREILGKNTTEPTK
               70        80        90       100       110       120

>>NP_077288 (OMIM: 252500,252600,607840) N-acetylglucosa  (1256 aa)
 initn: 460 init1: 460 opt: 460  Z-score: 698.1  bits: 137.2 E(85289): 3.8e-32
Smith-Waterman score: 460; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KE6 MLFKLLQRQTYTCLSHRYGLYVCFLGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MLFKLLQRQTYTCLSHRYGLYVCFLGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNI
               10        20        30        40        50        60

               70                                                  
pF1KE6 AGKSFQNRSVR                                                 
       ::::::::                                                    
NP_077 AGKSFQNRLCLPMPIDVVYTWVNGTDLELLKELQQVREQMEEEQKAMREILGKNTTEPTK
               70        80        90       100       110       120

>>XP_011537033 (OMIM: 252500,252600,607840) PREDICTED: N  (1229 aa)
 initn: 200 init1: 200 opt: 200  Z-score: 300.9  bits: 63.7 E(85289): 5.1e-10
Smith-Waterman score: 200; 100.0% identity (100.0% similar) in 29 aa overlap (40-68:13-41)

      10        20        30        40        50        60         
pF1KE6 TYTCLSHRYGLYVCFLGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNIAGKSFQNRS
                                     ::::::::::::::::::::::::::::: 
XP_011                   MASNHHCRPQSMVVLEWSRDQYHVLFDSYRDNIAGKSFQNRL
                                 10        20        30        40  

      70                                                           
pF1KE6 VR                                                          
                                                                   
XP_011 CLPMPIDVVYTWVNGTDLELLKELQQVREQMEEEQKAMREILGKNTTEPTKKSEKQLECL
             50        60        70        80        90       100  




71 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:12:28 2016 done: Tue Nov  8 14:12:29 2016
 Total Scan time:  2.580 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]