FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6536, 71 aa
  1>>>pF1KE6536 71 - 71 aa - 71 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5702+/-0.000595; mu= 9.9563+/- 0.036
 mean_var=42.8410+/- 8.909, 0's: 0 Z-trim(109.2): 10  B-trim: 0 in 0/50
 Lambda= 0.195950
 statistics sampled from 10724 (10726) to 10724 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.329), width:  16
 Scan time:  1.210

The best scores are:                                      opt bits E(32554)
CCDS9088.1 GNPTAB gene_id:79158|Hs108|chr12        (1256)  460 136.9 1.8e-32


>>CCDS9088.1 GNPTAB gene_id:79158|Hs108|chr12             (1256 aa)
 initn: 460 init1: 460 opt: 460  Z-score: 696.4  bits: 136.9 E(32554): 1.8e-32
Smith-Waterman score: 460; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KE6 MLFKLLQRQTYTCLSHRYGLYVCFLGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MLFKLLQRQTYTCLSHRYGLYVCFLGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNI
               10        20        30        40        50        60

               70                                                  
pF1KE6 AGKSFQNRSVR                                                 
       ::::::::                                                    
CCDS90 AGKSFQNRLCLPMPIDVVYTWVNGTDLELLKELQQVREQMEEEQKAMREILGKNTTEPTK
               70        80        90       100       110       120




71 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:12:28 2016 done: Tue Nov  8 14:12:28 2016
 Total Scan time:  1.210 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]